Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49439 | Canola | nucleus, plastid | 85.09 | 77.6 |
| Bra039937.1-P | Field mustard | nucleus, plastid | 84.21 | 69.57 |
| AT4G37710.2 | Thale cress | nucleus, plastid | 56.14 | 52.03 |
| CDX76888 | Canola | nucleus, plastid | 78.95 | 37.5 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816819 | UniProt:A0A178VL61 | ProteinID:AAC32435.1 | ProteinID:AEC07368.1 | ArrayExpress:AT2G22880 |
| EnsemblPlantsGene:AT2G22880 | RefSeq:AT2G22880 | TAIR:AT2G22880 | RefSeq:AT2G22880-TAIR-G | EnsemblPlants:AT2G22880.1 | TAIR:AT2G22880.1 |
| EMBL:BT012592 | EMBL:BT015098 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| GO:GO:0009628 | GO:GO:0010224 | GO:GO:0019904 | RefSeq:NP_179873.1 | UniProt:O81005 | ProteinID:OAP07200.1 |
| PFAM:PF05678 | PO:PO:0000293 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR34794 | PANTHER:PTHR34794:SF1 | UniParc:UPI00000A4246 |
| InterPro:VQ | : | : | : | : | : |
Description
At2g22880 [Source:UniProtKB/TrEMBL;Acc:O81005]
Coordinates
chr2:-:9741119..9741463
Molecular Weight (calculated)
12973.3 Da
IEP (calculated)
9.228
GRAVY (calculated)
-0.734
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATSQPCFS HNSSLHSTRK QPAKPWKKPV TGLPQRMHPK VYRVEPVNFK ELVQRLTGAE DVEQEVHQVE AKPVKISDDT TTAKDNPFAF DLSPSSSRFW
101: EAFPLLSPAN LSRW
101: EAFPLLSPAN LSRW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.