Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- extracellular 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010608.1-P | Field mustard | nucleus, plastid | 75.61 | 81.58 |
| CDY44030 | Canola | nucleus | 80.49 | 81.15 |
| CDY50261 | Canola | nucleus | 79.67 | 80.33 |
| CDY29579 | Canola | plastid | 69.92 | 75.44 |
| Bra017849.1-P | Field mustard | nucleus, plastid | 68.29 | 73.68 |
| CDX72651 | Canola | nucleus, plastid | 68.29 | 73.68 |
| AT2G22880.1 | Thale cress | plastid | 52.03 | 56.14 |
Protein Annotations
| MapMan:35.1 | EntrezGene:829927 | ProteinID:AEE86830.1 | ProteinID:ANM67051.1 | ArrayExpress:AT4G37710 | EnsemblPlantsGene:AT4G37710 |
| RefSeq:AT4G37710 | TAIR:AT4G37710 | RefSeq:AT4G37710-TAIR-G | EnsemblPlants:AT4G37710.2 | EMBL:AY086029 | Unigene:At.31231 |
| EMBL:BT029306 | ProteinID:CAB38310.1 | ProteinID:CAB80436.1 | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0071456 | RefSeq:NP_001320154.1 | RefSeq:NP_195485.1 |
| PFAM:PF05678 | PANTHER:PTHR34794 | PANTHER:PTHR34794:SF1 | UniProt:Q9SZG3 | UniParc:UPI00000A618F | InterPro:VQ |
| SEG:seg | : | : | : | : | : |
Description
VQ29VQ motif-containing protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZG3]
Coordinates
chr4:+:17718128..17718771
Molecular Weight (calculated)
13810.1 Da
IEP (calculated)
10.342
GRAVY (calculated)
-0.776
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATSQQFMS QSYLNAQETT TRATKNYLTS LHSTRKQPSK PLKRPAISSP LNPMHPHVYR VEPVNFKVLV QRLTGAPEHE TVQAKPLKTS DDAAKQSSSS
101: FAFDPSSSWG DFSFQNPANI SRW
101: FAFDPSSSWG DFSFQNPANI SRW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.