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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000699.1-P
Bra001608.1-P
Bra001900.1-P
Bra002459.1-P
Bra002821.1-P
Bra002827.1-P
Bra003118.1-P
Bra003428.1-P
Bra003438.1-P
Bra003510.1-P
Bra003797.1-P
Bra004031.1-P
Bra004190.1-P
Bra004319.1-P
Bra004644.1-P
Bra004645.1-P
Bra006662.1-P
Bra006753.1-P
Bra007149.1-P
Bra007565.1-P
Bra007576.1-P
Bra007701.1-P
Bra008154.1-P
Bra010823.1-P
Bra010975.1-P
Bra011468.1-P
Bra012303.1-P
Bra012346.1-P
Bra012496.1-P
Bra014245.1-P
Bra014328.1-P
Bra014468.1-P
Bra014767.1-P
Bra014932.1-P
Bra014934.1-P
Bra015906.1-P
Bra017426.1-P
Bra017504.1-P
Bra018618.1-P
Bra018839.1-P
Bra018971.1-P
Bra018982.1-P
Bra019106.1-P
Bra019509.1-P
Bra021172.1-P
Bra021980.1-P
Bra022104.1-P
Bra023739.1-P
Bra023834.1-P
Bra024541.1-P
Bra024774.1-P
Bra024837.1-P
Bra024892.1-P
Bra025286.1-P
Bra025713.1-P
Bra026122.1-P
Bra026439.1-P
Bra026619.1-P
Bra026757.1-P
Bra027180.1-P
Bra027204.1-P
Bra027435.1-P
Bra028933.1-P
Bra029112.1-P
Bra030154.1-P
Bra030284.1-P
Bra030378.1-P
Bra030380.1-P
Bra031210.1-P
Bra031421.1-P
Bra032329.1-P
Bra032625.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra033788.1-P
Bra033886.1-P
Bra034582.1-P
Bra035336.1-P
Bra035407.1-P
Bra035728.1-P
Bra035784.1-P
Bra036978.1-P
Bra037901.1-P
Bra038444.1-P
Bra038591.1-P
Bra039298.1-P
Bra039299.1-P
Bra039401.1-P
Bra039402.1-P
Bra040630.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G22920.1 Bra012303.1-P AT1G02090.1 11742986
AT1G22920.1 Bra032666.1-P AT1G02090.1 11742986
AT1G22920.1 Bra033219.1-P AT1G02090.1 11742986
AT1G22920.1 Bra018618.1-P AT1G08530.1 21798944
AT1G22920.1 Bra026122.1-P AT1G15550.1 21798944
AT1G22920.1 Bra026757.1-P AT1G15550.1 21798944
AT1G22920.1 Bra025713.1-P AT1G19180.1 21798944
AT1G22920.1 Bra012346.1-P AT1G22840.1 21798944
AT1G22920.1 Bra024541.1-P AT1G22840.1 21798944
AT1G22920.1 Bra010975.1-P AT1G24625.1 21798944
AT1G22920.1 Bra012496.1-P AT1G24625.1 21798944
AT1G22920.1 Bra010823.1-P AT1G29640.1 21798944
AT1G22920.1 Bra030154.1-P AT1G29640.1 21798944
AT1G22920.1 Bra032329.1-P AT1G29640.1 21798944
AT1G22920.1 Bra014245.1-P AT1G50300.1 21798944
AT1G22920.1 Bra018839.1-P AT1G50300.1 21798944
AT1G22920.1 Bra030380.1-P AT1G52510.1 21798944
AT1G22920.1 Bra018971.1-P AT1G52540.1 21798944
AT1G22920.1 Bra030378.1-P AT1G52540.1 21798944
AT1G22920.1 Bra018982.1-P AT1G52695.1 21798944
AT1G22920.1 Bra031421.1-P AT1G61590.1 21798944
AT1G22920.1 Bra038591.1-P AT1G61590.1 21798944
AT1G22920.1 Bra004190.1-P AT1G66820.1 21798944
AT1G22920.1 Bra040630.1-P AT1G66820.1 21798944
AT1G22920.1 Bra004031.1-P AT1G68560.1 21798944
AT1G22920.1 Bra004319.1-P AT1G68560.1 21798944
AT1G22920.1 Bra035407.1-P AT1G68560.1 21798944
AT1G22920.1 Bra003797.1-P AT1G74500.1 21798944
AT1G22920.1 Bra008154.1-P AT1G74500.1 21798944
AT1G22920.1 Bra015906.1-P AT1G74500.1 21798944
AT1G22920.1 Bra014328.1-P AT2G01290.1 21798944
AT1G22920.1 Bra024892.1-P AT2G01290.1 21798944
AT1G22920.1 Bra017426.1-P AT2G02050.1 21798944
AT1G22920.1 Bra024837.1-P AT2G02050.1 21798944
AT1G22920.1 Bra026619.1-P AT2G02050.1 21798944
AT1G22920.1 Bra030284.1-P AT2G21660.1 21798944
AT1G22920.1 Bra031210.1-P AT2G21660.1 21798944
AT1G22920.1 Bra004644.1-P AT2G41730.1 21798944
AT1G22920.1 Bra004645.1-P AT2G41730.1 21798944
AT1G22920.1 Bra039298.1-P AT2G42395.1 21798944
AT1G22920.1 Bra039299.1-P AT2G42395.1 21798944
AT1G22920.1 Bra027435.1-P AT3G13440.1 21798944
AT1G22920.1 Bra039401.1-P AT3G13440.1 21798944
AT1G22920.1 Bra039402.1-P AT3G13440.1 21798944
AT1G22920.1 Bra001608.1-P AT3G15840.1 21798944
AT1G22920.1 Bra027204.1-P AT3G15840.1 21798944
AT1G22920.1 Bra021172.1-P AT3G16250.1 21798944
AT1G22920.1 Bra027180.1-P AT3G16250.1 21798944
AT1G22920.1 Bra035784.1-P AT3G20420.1 21798944
AT1G22920.1 Bra001900.1-P AT3G23050.1 21798944
AT1G22920.1 Bra033886.1-P AT3G23050.1 21798944
AT1G22920.1 Bra014932.1-P AT3G23280.1 21798944
AT1G22920.1 Bra014934.1-P AT3G23280.1 21798944
AT1G22920.1 Bra023739.1-P AT3G23280.1 21798944
AT1G22920.1 Bra025286.1-P AT3G27560.1 21798944
AT1G22920.1 Bra002459.1-P AT3G45210.1 21798944
AT1G22920.1 Bra019509.1-P AT3G47640.1 21798944
AT1G22920.1 Bra033788.1-P AT3G47640.1 21798944
AT1G22920.1 Bra007149.1-P AT3G55240.1 21798944
AT1G22920.1 Bra014767.1-P AT3G55240.1 21798944
AT1G22920.1 Bra003428.1-P AT3G60820.1 21798944
AT1G22920.1 Bra007565.1-P AT3G60820.1 21798944
AT1G22920.1 Bra014468.1-P AT3G60820.1 21798944
AT1G22920.1 Bra003438.1-P AT3G61140.1 12615944
AT1G22920.1 Bra007576.1-P AT3G61140.1 12615944
AT1G22920.1 Bra003438.1-P AT3G61140.1 9811788
AT1G22920.1 Bra007576.1-P AT3G61140.1 9811788
AT1G22920.1 Bra003510.1-P AT3G62790.1 21798944
AT1G22920.1 Bra007701.1-P AT3G62790.1 21798944
AT1G22920.1 Bra006662.1-P AT4G07950.1 21798944
AT1G22920.1 Bra024774.1-P AT4G07950.1 21798944
AT1G22920.1 Bra032625.1-P AT4G07950.1 21798944
AT1G22920.1 Bra000699.1-P AT4G10040.1 21798944
AT1G22920.1 Bra037901.1-P AT4G10040.1 21798944
AT1G22920.1 Bra032760.1-P AT4G14110.1 11701877
AT1G22920.1 Bra038444.1-P AT4G14110.1 11701877
AT1G22920.1 Bra032760.1-P AT4G14110.1 11742986
AT1G22920.1 Bra038444.1-P AT4G14110.1 11742986
AT1G22920.1 Bra019106.1-P AT4G26430.1 11742986
AT1G22920.1 Bra026439.1-P AT4G26430.1 11742986
AT1G22920.1 Bra011468.1-P AT4G33770.1 21798944
AT1G22920.1 Bra034582.1-P AT4G33770.1 21798944
AT1G22920.1 Bra036978.1-P AT4G33770.1 21798944
AT1G22920.1 Bra023834.1-P AT5G42300.1 21798944
AT1G22920.1 Bra033654.1-P AT5G42970.1 12615944
AT1G22920.1 Bra035336.1-P AT5G42970.1 12615944
AT1G22920.1 Bra021980.1-P AT5G45490.1 21798944
AT1G22920.1 Bra017504.1-P AT5G47100.1 21798944
AT1G22920.1 Bra022104.1-P AT5G47100.1 21798944
AT1G22920.1 Bra035728.1-P AT5G51170.1 21798944
AT1G22920.1 Bra003118.1-P AT5G52650.1 21798944
AT1G22920.1 Bra029112.1-P AT5G52650.1 21798944
AT1G22920.1 Bra002827.1-P AT5G56280.1 11701877
AT1G22920.1 Bra002827.1-P AT5G56280.1 11742986
AT1G22920.1 Bra002827.1-P AT5G56280.1 12615944
AT1G22920.1 Bra002827.1-P AT5G56280.1 21798944
AT1G22920.1 Bra002821.1-P AT5G56360.1 21798944
AT1G22920.1 Bra028933.1-P AT5G56360.1 21798944
AT1G22920.1 Bra006753.1-P AT5G58575.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04768 Canola cytosol 100.0 100.0
CDY21400 Canola cytosol 100.0 100.0
AT1G22920.1 Thale cress cytosol 91.57 91.32
Bra012351.1-P Field mustard cytosol 89.04 89.04
VIT_03s0038g04360.t01 Wine grape cytosol 83.15 82.22
HORVU3Hr1G054660.1 Barley cytosol 55.9 81.56
PGSC0003DMT400023896 Potato cytosol 83.71 81.2
HORVU0Hr1G018470.1 Barley cytosol 55.34 81.07
HORVU6Hr1G023630.1 Barley cytosol 54.49 80.83
Solyc11g017300.1.1 Tomato cytosol 83.15 80.65
HORVU7Hr1G078010.1 Barley cytosol 30.62 80.15
PGSC0003DMT400069203 Potato cytosol 82.58 80.11
Solyc06g073150.2.1 Tomato cytosol 82.02 79.56
KRH61926 Soybean nucleus 82.87 78.88
GSMUA_Achr10P... Banana cytosol 81.18 78.53
HORVU1Hr1G008160.1 Barley cytosol 33.43 78.29
Os04t0654700-02 Rice cytosol 78.37 77.5
Zm00001d002027_P002 Maize extracellular 78.37 77.07
TraesCS2A01G504600.1 Wheat cytosol 78.65 76.92
TraesCS2D01G505300.1 Wheat golgi, unclear 78.37 76.65
KXG27287 Sorghum cytosol 78.37 74.8
HORVU0Hr1G025410.1 Barley cytosol 62.08 73.42
HORVU4Hr1G048730.1 Barley cytosol 62.08 73.18
HORVU3Hr1G113750.1 Barley cytosol 31.46 72.26
KRH52586 Soybean cytosol, nucleus 82.58 71.88
HORVU2Hr1G056160.5 Barley cytosol 32.02 67.86
HORVU2Hr1G112000.1 Barley cytosol 70.51 63.07
HORVU2Hr1G067660.1 Barley cytosol, peroxisome 12.08 61.43
HORVU3Hr1G021300.1 Barley cytosol, plastid 25.84 55.76
HORVU4Hr1G047410.2 Barley cytosol, mitochondrion, peroxisome 25.28 35.57
Bra029375.1-P Field mustard cytosol 21.07 30.12
Bra026492.1-P Field mustard cytosol 24.44 28.25
Bra009693.1-P Field mustard cytosol 24.44 28.25
Protein Annotations
EnsemblPlants:Bra024548.1EnsemblPlants:Bra024548.1-PEnsemblPlantsGene:Bra024548Gene3D:3.40.140.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR037518InterPro:JAMM/MPN+_domInterPro:MPNMEROPS:M67.A01PANTHER:PTHR10410
PANTHER:PTHR10410:SF14PFAM:PF01398PFscan:PS50249SEG:segSMART:SM00232SUPFAM:SSF102712
UniParc:UPI00019D345BUniProt:M4E6Z3MapMan:19.2.3.3.1.5:::
Description
AT1G22920 (E=3e-180) CSN5A, JAB1, AJH1 | CSN5A (COP9 SIGNALOSOME 5A)
Coordinates
chrA09:+:24469975..24471950
Molecular Weight (calculated)
39797.7 Da
IEP (calculated)
4.710
GRAVY (calculated)
-0.431
Length
356 amino acids
Sequence
(BLAST)
001: MDDSSTIARK TWELENNILT VEQPDSSSSD GIFYYDEASQ TKVQQEKPWA TDPNYFKRVQ ISALALLKMV VHARSGGTIE IMGLMQGKTE GDTIIVMDAF
101: ALPVEGTETR VNAQADAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLAHSRFG GIPASLHRKK
301: EDEPPLAKIT RDSAKITVEQ VHGLMSQVIK DILFNSARQS DKTPSDPSDP EPMITS
Best Arabidopsis Sequence Match ( AT1G22920.1 )
(BLAST)
001: MEGSSSAIAR KTWELENNIL PVEPTDSASD SIFHYDDASQ AKIQQEKPWA SDPNYFKRVH ISALALLKMV VHARSGGTIE IMGLMQGKTE GDTIIVMDAF
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS
Arabidopsis Description
CSN5ACOP9 signalosome complex subunit 5a [Source:UniProtKB/Swiss-Prot;Acc:Q8LAZ7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.