Factsheet for Bra003797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004740.1-P
Bra004879.1-P
Bra006453.1-P
Bra013840.1-P
Bra019205.1-P
Bra037738.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74500.1	Bra004740.1-P	AT2G43060.1	21798944
AT1G74500.1	Bra037738.1-P	AT2G43060.1	21798944
AT1G74500.1	Bra004879.1-P	AT2G44950.1	21798944
AT1G74500.1	Bra040332.1-P	AT2G44950.1	21798944
AT1G74500.1	Bra006453.1-P	AT4G24840.1	21798944
AT1G74500.1	Bra013840.1-P	AT4G24840.1	21798944
AT1G74500.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85841	Canola	cytosol, mitochondrion, nucleus, plastid	98.92	98.92
CDX85840	Canola	cytosol, mitochondrion, nucleus, plastid	98.92	98.92
CDX68180	Canola	cytosol, mitochondrion, nucleus, plastid	98.92	98.92
AT1G74500.1	Thale cress	nucleus	93.55	93.55
Bra015906.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	90.32	93.33
Bra008154.1-P	Field mustard	nucleus	89.25	89.25
Solyc06g070910.2.1	Tomato	nucleus	75.27	76.09
Bra016299.1-P	Field mustard	nucleus	75.27	74.47
Bra024672.1-P	Field mustard	nucleus	75.27	73.68
Bra012435.1-P	Field mustard	nucleus	74.19	73.4
Bra018117.1-P	Field mustard	nucleus	72.04	72.04
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.44	64.13
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.44	64.13
Bra023508.1-P	Field mustard	mitochondrion	63.44	63.44
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	62.37	63.04
Bra008716.1-P	Field mustard	mitochondrion, plastid	62.37	61.7
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	60.22	59.57

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra003797	EnsemblPlants:Bra003797.1	EnsemblPlants:Bra003797.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009790
GO:GO:0010086	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CHW4
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF172	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI00025416AA	InterPro:bHLH_dom	:	:	:	:

Description

AT1G74500 (E=5e-042) | bHLH family protein

Coordinates

chrA07:+:15125052..15125419

Molecular Weight (calculated)

10577.6 Da

IEP (calculated)

8.526

GRAVY (calculated)

-0.449

Length

93 amino acids

Sequence
(BLAST)

1: MSGRISRSRQ VSGTSRISEE QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQETCNYIRN LHREVDDLSE RLSELLANTD TAQAALIRSL LTL

Best Arabidopsis Sequence Match ( AT1G74500.1 )
(BLAST)

1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ

Arabidopsis Description

PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.