Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra032610.1-P | |
| Bra033315.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26945.1 | Bra032610.1-P | AT1G02340.1 | 16786307 |
| AT1G26945.1 | Bra033315.1-P | AT1G02340.1 | 16786307 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40269 | Canola | nucleus | 100.0 | 100.0 |
| CDY28427 | Canola | nucleus | 98.94 | 98.94 |
| AT1G26945.1 | Thale cress | nucleus | 96.81 | 96.81 |
| Bra016299.1-P | Field mustard | nucleus | 96.81 | 96.81 |
| Bra024672.1-P | Field mustard | nucleus | 94.68 | 93.68 |
| VIT_01s0026g02030.t01 | Wine grape | mitochondrion | 82.98 | 84.78 |
| PGSC0003DMT400059345 | Potato | nucleus | 76.6 | 83.72 |
| Solyc05g007210.2.1 | Tomato | nucleus | 76.6 | 83.72 |
| Bra015906.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 75.53 | 78.89 |
| Bra003797.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 73.4 | 74.19 |
| Bra008154.1-P | Field mustard | nucleus | 72.34 | 73.12 |
| Bra018117.1-P | Field mustard | nucleus | 71.28 | 72.04 |
| Bra023508.1-P | Field mustard | mitochondrion | 70.21 | 70.97 |
| Bra025358.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.15 | 70.65 |
| Bra033063.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.15 | 70.65 |
| Bra028443.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 68.09 | 69.57 |
| Bra008716.1-P | Field mustard | mitochondrion, plastid | 69.15 | 69.15 |
| Bra006286.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 65.96 | 65.96 |
Protein Annotations
| EnsemblPlants:Bra012435.1 | EnsemblPlants:Bra012435.1-P | EnsemblPlantsGene:Bra012435 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SUPFAM:SSF47459 | UniParc:UPI0002540B86 | UniProt:M4D7H5 | MapMan:15.5.32 | : | : |
Description
AT1G26945 (E=1e-032) KDR | KDR (KIDARI); transcription regulator
Coordinates
chrA07:+:7634941..7635782
Molecular Weight (calculated)
10767.5 Da
IEP (calculated)
8.509
GRAVY (calculated)
-0.776
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSSRSR QSGSSRISDD QISDLVTKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSEFLASTDD NSAEAAIIRS LLDY
1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY
Arabidopsis Description
PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.