Factsheet for Bra032610.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra005541.1-P
Bra012435.1-P
Bra013900.1-P
Bra016299.1-P
Bra017300.1-P
Bra019154.1-P
Bra022192.1-P
Bra024672.1-P
Bra032610.1-P
Bra033315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02340.1	Bra032610.1-P	AT1G02340.1	17699755
AT1G02340.1	Bra033315.1-P	AT1G02340.1	17699755
AT1G02340.1	Bra012435.1-P	AT1G26945.1	16786307
AT1G02340.1	Bra016299.1-P	AT1G26945.1	16786307
AT1G02340.1	Bra024672.1-P	AT1G26945.1	16786307
AT1G02340.1	Bra001650.1-P	AT2G18790.1	10995393
AT1G02340.1	Bra022192.1-P	AT2G18790.1	10995393
AT1G02340.1	Bra005541.1-P	AT2G32950.1	15741320
AT1G02340.1	Bra005541.1-P	AT2G32950.1	17699755
AT1G02340.1	Bra017300.1-P	AT2G35720.1	19808946
AT1G02340.1	Bra013900.1-P	AT4G25560.1	17699755
AT1G02340.1	Bra019154.1-P	AT4G25560.1	17699755

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32456	Canola	nucleus	69.34	69.6
CDY55316	Canola	nucleus	65.69	64.29
Bra033315.1-P	Field mustard	nucleus	44.53	52.14
AT1G02340.1	Thale cress	nucleus	52.19	48.97

Protein Annotations

MapMan:15.5.32	Gene3D:2.60.120.10	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra032610	EnsemblPlants:Bra032610.1	EnsemblPlants:Bra032610.1-P
InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0045735	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR014710	InterPro:IPR036638	UniProt:M4EUX7	PFAM:PF00010
PFAM:PF00190	PFscan:PS50888	PANTHER:PTHR31238	PANTHER:PTHR31238:SF18	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF51182	UniParc:UPI00025430EE	InterPro:bHLH_dom	:

Description

AT1G02340 (E=2e-068) HFR1, RSF1, FBI1, REP1 | HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor

Coordinates

chrA09:+:36818654..36829237

Molecular Weight (calculated)

31360.6 Da

IEP (calculated)

9.646

GRAVY (calculated)

-0.645

Length

274 amino acids

Sequence
(BLAST)

001: MLFPSSLPRM TARVTPLTLA CCGLNNQDLM GLEWTNDVES LALKDQDISV RARSGEDRIT NGLKWSDDYF YYDQADFHLQ IVPEIRKEEE NSKKDLTLVV
101: PDEHSETGDH HLHIKDYSDS SYNRRFLRNK HAKPKRRRVQ ILSDDESGDF SRKVPLVIRK SSKRRIRDDM MSNKMRTLQQ LVPNCHKTDK VSVLDKTIEY
201: MKNLQLQLQK NNGKSPASVL SAFNSQLPGT VSVAAMLFAA EPALPEDVLT KTFQLGSKMV DKIKDMLATK KSFK

Best Arabidopsis Sequence Match ( AT1G02340.1 )
(BLAST)

001: MSNNQAFMEL GWRNDVGSLA VKDQGMMSER ARSDEDRLIN GLKWGYGYFD HDQTDNYLQI VPEIHKEVEN AKEDLLVVVP DEHSETDDHH HIKDFSERSD
101: HRFYLRNKHE NPKKRRIQVL SSDDESEEFT REVPSVTRKG SKRRRRDEKM SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQMM STVGVNPYFL
201: PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP LPPFTNISFP HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL

Arabidopsis Description

HFR1Transcription factor HFR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.