Factsheet for Bra033315.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra005541.1-P
Bra012435.1-P
Bra013900.1-P
Bra016299.1-P
Bra017300.1-P
Bra019154.1-P
Bra022192.1-P
Bra024672.1-P
Bra032610.1-P
Bra033315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02340.1	Bra032610.1-P	AT1G02340.1	17699755
AT1G02340.1	Bra033315.1-P	AT1G02340.1	17699755
AT1G02340.1	Bra012435.1-P	AT1G26945.1	16786307
AT1G02340.1	Bra016299.1-P	AT1G26945.1	16786307
AT1G02340.1	Bra024672.1-P	AT1G26945.1	16786307
AT1G02340.1	Bra001650.1-P	AT2G18790.1	10995393
AT1G02340.1	Bra022192.1-P	AT2G18790.1	10995393
AT1G02340.1	Bra005541.1-P	AT2G32950.1	15741320
AT1G02340.1	Bra005541.1-P	AT2G32950.1	17699755
AT1G02340.1	Bra017300.1-P	AT2G35720.1	19808946
AT1G02340.1	Bra013900.1-P	AT4G25560.1	17699755
AT1G02340.1	Bra019154.1-P	AT4G25560.1	17699755

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15232	Canola	nucleus	85.04	71.33
AT1G02340.1	Thale cress	nucleus	62.39	50.0
Bra032610.1-P	Field mustard	mitochondrion, nucleus	52.14	44.53

Protein Annotations

EnsemblPlants:Bra033315.1	EnsemblPlants:Bra033315.1-P	EnsemblPlantsGene:Bra033315	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SUPFAM:SSF47459	UniParc:UPI0002544F67
UniProt:M4EWY0	MapMan:15.5.32	:	:	:	:

Description

AT1G02340 (E=7e-076) HFR1, RSF1, FBI1, REP1 | HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor

Coordinates

chrA10:+:4309263..4311412

Molecular Weight (calculated)

26798.4 Da

IEP (calculated)

5.995

GRAVY (calculated)

-0.774

Length

234 amino acids

Sequence
(BLAST)

001: MELGWNNDVE SLAVKDQGIS ERARSDKERL ITGLKSSYGY VDHDQTDIQF QTVPEIHREE EISEKDLTLA VPDEHSETGD HHDHQTYDFS DNQNYLRNKH
101: VKPKRSRIEI FSDDESEGFT REVPTVTRKG FKGRRNDMLS NKMRKLQKLL PNCHKEDTVS VLDKAIEYMK DLQLQLQVMS IMGMNPYFAQ ATLNFGMHNH
201: LVTAMARYSS GYKSGESNNV VTVNPGVEFA VATV

Best Arabidopsis Sequence Match ( AT1G02340.1 )
(BLAST)

001: MSNNQAFMEL GWRNDVGSLA VKDQGMMSER ARSDEDRLIN GLKWGYGYFD HDQTDNYLQI VPEIHKEVEN AKEDLLVVVP DEHSETDDHH HIKDFSERSD
101: HRFYLRNKHE NPKKRRIQVL SSDDESEEFT REVPSVTRKG SKRRRRDEKM SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQMM STVGVNPYFL
201: PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP LPPFTNISFP HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL

Arabidopsis Description

HFR1Transcription factor HFR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.