Factsheet for Bra017300.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra032610.1-P
Bra033315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35720.1	Bra032610.1-P	AT1G02340.1	19808946
AT2G35720.1	Bra033315.1-P	AT1G02340.1	19808946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40444	Canola	nucleus	98.71	99.26
AT2G35720.1	Thale cress	cytosol	84.9	85.69
PGSC0003DMT400012260	Potato	plastid	32.6	66.54
VIT_02s0154g00550.t01	Wine grape	cytosol	65.56	66.29
Solyc08g078660.2.1	Tomato	nucleus	65.56	65.93
KRH77367	Soybean	cytosol	60.96	61.3
KRH28073	Soybean	cytosol	58.38	60.27
EER91398	Sorghum	cytosol	58.56	58.89
Os10t0507800-02	Rice	cytosol	58.2	58.52
Zm00001d032505_P002	Maize	plasma membrane	58.01	58.33
TraesCS1B01G204300.1	Wheat	cytosol	56.91	57.22
TraesCS1A01G175900.1	Wheat	cytosol	56.72	57.04
TraesCS1D01G162900.1	Wheat	cytosol	56.35	56.67
HORVU1Hr1G046670.2	Barley	cytosol	55.62	55.93
GSMUA_Achr8P11100_001	Banana	cytosol	52.12	51.93

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.1	EnsemblPlantsGene:Bra017300	EnsemblPlants:Bra017300.1	EnsemblPlants:Bra017300.1-P	ncoils:Coil
InterPro:DnaJ-like_C11_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009536	GO:GO:0009628
GO:GO:0009791	GO:GO:0010228	GO:GO:0016020	GO:GO:0016021	GO:GO:0055122	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M4DLB9	PFAM:PF00226	PFAM:PF11875	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44914	SMART:SM00271	SUPFAM:SSF46565	TMHMM:TMhelix
UniParc:UPI0002543E4B	SEG:seg	:	:	:	:

Description

AT2G35720 (E=6e-248) | DNAJ heat shock N-terminal domain-containing protein

Coordinates

chrA04:+:15488727..15491658

Molecular Weight (calculated)

59891.1 Da

IEP (calculated)

9.435

GRAVY (calculated)

-0.335

Length

543 amino acids

Sequence
(BLAST)

001: MMGDEAAAAR TGPQNRELYA LLNLSPEASD EEIRRAYRQW AQVYHPDKSP SPLMKEVAEE NFKRICEAYE ILSDETKRLI YDLYGMEGLS SGLELGPRLS
101: KAEEIKEELE RIKRREEEAK KMAHFMPTGS ILFNLSVPSF LEGDGIMRGM VMASQVQSQL SKDDAVAIAG NLAANQRSGG GIGTVILRRQ LSPVSSIEFV
201: ASTGLQSLIG MQTTRQLSIH STATINISKS FSDGSINLTN TWTRQLSETS SGNIELALGM RSGITVGWKK RDENVSAGGD LKIETGGLGA SARYTRKLSS
301: KSHGRIAGRI GSNALEIEVG GGRKISEFST VRMMYTIGLK GVFWKLELHR GGQKLIVPVL LSAYISPVFA TGAFIVPTSL YFLLKKFVVK PYMQKREKRK
401: ALENTEKTYG KVREARASAE KAQQLLQNVA TRKKNRQAET GGLIVTKALY GDAKAIEKRH EHLDEEVDSG VIDVTVPMNF LVSDSGELKL HEGVKKSGIM
501: GFCDPCPDQP KQLYVAYTYN SRTFEAIVGD FEEMVIPQAG QRV

Best Arabidopsis Sequence Match ( AT2G35720.1 )
(BLAST)

001: MMGQEAAPTG PPNRELYALL NLSPEASDEE IRKAYRQWAQ VYHPDKIQSP QMKEVATENF QRICEAYEIL SDETKRLIYD LYGMEGLNSG LELGPRLSKA
101: DEIKEELERI KRRNEEAKKM AHFQPTGSIL FNLSVPHFLV GDGIMRGMVM ASQVQSQLSK DDAIAIGGNL AANEKSGGGV ATAILRRQIS PVSSIEFVAS
201: TGLQSLIGVQ TTRQLTIHST ATINISKSLS DGSINLTNTW TRQLSETSSG NIELALGMRS AITVGWKKRD ENVSAAGDFK IESGGLGASA RYTRKLSSKS
301: HGRIVGRIGS NALEIELGGG RQISEFSTVR MMYTVGLKGI FWKVELHRGS QKLIVPILLS AHLAPVFATG AFIVPTSLYF LLKKFVVKPY LLKREKQKAL
401: ENMEKTWGQV GEARARAEKA QQLLQTVATR KKNRQVETDG LIVTKALYGD PKAIERRNEG VEGLDSGVID VTVPMNFLVS DSGQLKLHEG VKKSGIMGFC
501: DPCPGQPKQL YIAYTYHSQP FEVIVGDYEE LSIPQEGQ

Arabidopsis Description

ATJ13Chaperone protein dnaJ 13 [Source:UniProtKB/Swiss-Prot;Acc:Q39079]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.