CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89982
CDY15232
CDY32456
CDY55316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35720.1	CDX89982	AT1G02340.1	19808946
AT2G35720.1	CDY15232	AT1G02340.1	19808946
AT2G35720.1	CDY32456	AT1G02340.1	19808946
AT2G35720.1	CDY55316	AT1G02340.1	19808946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017300.1-P	Field mustard	nucleus	99.26	98.71
CDY65318	Canola	nucleus	98.33	98.33
AT2G35720.1	Thale cress	cytosol	85.19	85.5
PGSC0003DMT400012260	Potato	plastid	32.78	66.54
Solyc08g078660.2.1	Tomato	nucleus	65.93	65.93
VIT_02s0154g00550.t01	Wine grape	cytosol	65.56	65.92
KRH77367	Soybean	cytosol	61.11	61.11
KRH28073	Soybean	cytosol	58.52	60.08
EER91398	Sorghum	cytosol	59.07	59.07
Os10t0507800-02	Rice	cytosol	58.89	58.89
Zm00001d032505_P002	Maize	plasma membrane	58.52	58.52
TraesCS1B01G204300.1	Wheat	cytosol	57.22	57.22
TraesCS1A01G175900.1	Wheat	cytosol	57.04	57.04
TraesCS1D01G162900.1	Wheat	cytosol	56.67	56.67
HORVU1Hr1G046670.2	Barley	cytosol	55.93	55.93
GSMUA_Achr8P11100_001	Banana	cytosol	52.22	51.74

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.1	GO:A0A078HT37	UniProt:A0A078HT37	EnsemblPlants:CDY40444	ProteinID:CDY40444
ProteinID:CDY40444.1	ncoils:Coil	InterPro:DnaJ-like_C11_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00069662001	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
PFAM:PF00226	PFAM:PF11875	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44914
SMART:SM00271	SUPFAM:SSF46565	TMHMM:TMhelix	UniParc:UPI0004EF1EA0	SEG:seg	:

Description

BnaA04g20730DBnaA04g20730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT37]

Coordinates

chrLK032470:-:177019..180169

Molecular Weight (calculated)

59599.7 Da

IEP (calculated)

9.435

GRAVY (calculated)

-0.348

Length

540 amino acids

Sequence
(BLAST)

001: MGDEAAAART GPQNRELYAL LNLSPEASDE EIRRAYRQWA QVYHPDKSPS PLMKEVAEEN FKRICEAYEI LSDETKRLIY DLYGMEGLSS GLELGPRLSK
101: AEEIKEELER IKRREEEAKK MAHFMPTGSI LFNLSVPSFL EGDGIMRGMV MASQVQSQLS KDDAVAIAGN LAANQRSGGG IGTVILRRQL SPVSSIEFVA
201: STGLQSLIGM QTTRQLSIHS TATINISKSF SDGSINLTNT WTRQLSETSS GNIELALGMR SGITVGWKKR DENVSAGGDL KIETGGLGAS ARYTRKLSSK
301: SHGRIAGRIG SNALEIEVGG GRKISEFSTV RMMYTIGLKG VFWKLELHRG GQKLIVPVLL SAYISPVFAT GAFIVPTSLY FLLKKFVVKP YMQKREKRKA
401: LENTEKTYGK VREARRSAEK AQQLLQNVAT RKKNRQAETG GLIVTKALYG DAKAIEKRHE HLEEEVESGV IDVTVPMNFL VSDSGELKLH EGVKKSGIMG
501: FCDPCPDQPK QLYVAYTYNS RTFEAIVGDF EELVIPQAGQ

Best Arabidopsis Sequence Match ( AT2G35720.1 )
(BLAST)

001: MMGQEAAPTG PPNRELYALL NLSPEASDEE IRKAYRQWAQ VYHPDKIQSP QMKEVATENF QRICEAYEIL SDETKRLIYD LYGMEGLNSG LELGPRLSKA
101: DEIKEELERI KRRNEEAKKM AHFQPTGSIL FNLSVPHFLV GDGIMRGMVM ASQVQSQLSK DDAIAIGGNL AANEKSGGGV ATAILRRQIS PVSSIEFVAS
201: TGLQSLIGVQ TTRQLTIHST ATINISKSLS DGSINLTNTW TRQLSETSSG NIELALGMRS AITVGWKKRD ENVSAAGDFK IESGGLGASA RYTRKLSSKS
301: HGRIVGRIGS NALEIELGGG RQISEFSTVR MMYTVGLKGI FWKVELHRGS QKLIVPILLS AHLAPVFATG AFIVPTSLYF LLKKFVVKPY LLKREKQKAL
401: ENMEKTWGQV GEARARAEKA QQLLQTVATR KKNRQVETDG LIVTKALYGD PKAIERRNEG VEGLDSGVID VTVPMNFLVS DSGQLKLHEG VKKSGIMGFC
501: DPCPGQPKQL YIAYTYHSQP FEVIVGDYEE LSIPQEGQ

Arabidopsis Description

ATJ13Chaperone protein dnaJ 13 [Source:UniProtKB/Swiss-Prot;Acc:Q39079]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.