Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32456 | Canola | nucleus | 90.0 | 92.31 |
| CDX89982 | Canola | nucleus | 65.0 | 67.41 |
| AT1G02340.1 | Thale cress | nucleus | 69.64 | 66.78 |
| CDY15232 | Canola | nucleus | 66.07 | 66.31 |
| Bra032610.1-P | Field mustard | mitochondrion, nucleus | 64.29 | 65.69 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078IV35 | UniProt:A0A078IV35 | EnsemblPlants:CDY55316 | ProteinID:CDY55316 |
| ProteinID:CDY55316.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00016668001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF284 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF0586 | InterPro:bHLH_dom | : |
Description
BnaC08g49690DBnaC08g49690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV35]
Coordinates
chrLK033393:+:16983..18870
Molecular Weight (calculated)
32232.3 Da
IEP (calculated)
8.041
GRAVY (calculated)
-0.691
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEWTNDVE SLALKDQDIS VRARSDEDRI TNGLKWSDDY FYYHQANFHL QIVPENRKEE ENSEKDLTLV VPDEHSETGD HHLHIKDYSE YNRRFLRNKH
101: AKPKRRRVQI LSDDESEDFS RKVPLVTRKS SKRRIRDDMM SNKMRTLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQVM SIMGTNPYIP QATLDFGMHN
201: HLLTAMGIAH GLNPAKQTTL SPLIAASNWP SPPFSNLSFP HSSNQSLFPP PASSPQCLCG LVRCFPTFFD FSSNTMGGRL
101: AKPKRRRVQI LSDDESEDFS RKVPLVTRKS SKRRIRDDMM SNKMRTLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQVM SIMGTNPYIP QATLDFGMHN
201: HLLTAMGIAH GLNPAKQTTL SPLIAASNWP SPPFSNLSFP HSSNQSLFPP PASSPQCLCG LVRCFPTFFD FSSNTMGGRL
001: MELGWRNDVG SLAVKDQGMM SERARSDEDR LINGLKWGYG YFDHDQTDNY LQIVPEIHKE VENAKEDLLV VVPDEHSETD DHHHIKDFSE RSDHRFYLRN
101: KHENPKKRRI QVLSSDDESE EFTREVPSVT RKGSKRRRRD EKMSNKMRKL QQLVPNCHKT DKVSVLDKTI EYMKNLQLQL QMMSTVGVNP YFLPATLGFG
201: MHNHMLTAMA SAHGLNPANH MMPSPLIPAL NWPLPPFTNI SFPHSSSQSL FLTTSSPASS PQSLHGLVPY FPSFLDFSSH AMRRL
101: KHENPKKRRI QVLSSDDESE EFTREVPSVT RKGSKRRRRD EKMSNKMRKL QQLVPNCHKT DKVSVLDKTI EYMKNLQLQL QMMSTVGVNP YFLPATLGFG
201: MHNHMLTAMA SAHGLNPANH MMPSPLIPAL NWPLPPFTNI SFPHSSSQSL FLTTSSPASS PQSLHGLVPY FPSFLDFSSH AMRRL
Arabidopsis Description
HFR1Transcription factor HFR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.