Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89413 | Canola | nucleus | 86.38 | 82.22 |
| CDY50197 | Canola | nucleus | 71.21 | 73.2 |
| CDX92718 | Canola | nucleus | 73.93 | 72.52 |
| AT4G25560.1 | Thale cress | nucleus | 76.26 | 69.26 |
| Solyc01g009650.1.1 | Tomato | nucleus | 22.57 | 63.74 |
| CDY32589 | Canola | nucleus | 55.25 | 56.57 |
| CDY05516 | Canola | nucleus | 28.79 | 56.06 |
| CDY05331 | Canola | nucleus | 28.4 | 55.3 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 29.18 | 52.82 |
| CDY38910 | Canola | nucleus | 54.86 | 52.81 |
| KRH35334 | Soybean | nucleus | 39.69 | 37.78 |
| KRH09018 | Soybean | nucleus | 42.41 | 37.46 |
| KRH38485 | Soybean | nucleus | 41.63 | 36.77 |
| Os04t0532800-01 | Rice | nucleus | 38.13 | 35.9 |
| CDY64708 | Canola | nucleus | 35.8 | 35.66 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 38.91 | 35.59 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 38.13 | 35.38 |
| CDY05881 | Canola | nucleus | 35.41 | 35.27 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 38.13 | 35.13 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 37.74 | 35.02 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 37.35 | 34.78 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 36.97 | 34.67 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 36.58 | 34.31 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 37.74 | 34.28 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 37.74 | 34.28 |
| PGSC0003DMT400037080 | Potato | nucleus | 36.97 | 34.17 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 32.68 | 34.15 |
| Solyc03g025870.2.1 | Tomato | nucleus | 36.58 | 33.69 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 36.97 | 33.57 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 37.35 | 32.21 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 35.41 | 31.71 |
| Zm00001d017383_P001 | Maize | nucleus | 35.8 | 31.62 |
| EES11177 | Sorghum | nucleus | 36.58 | 31.54 |
| Zm00001d051267_P001 | Maize | nucleus | 33.85 | 31.3 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 33.85 | 31.18 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 26.85 | 30.94 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 33.46 | 30.94 |
| KRG91494 | Soybean | nucleus | 40.08 | 30.93 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 36.58 | 30.92 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 35.41 | 30.85 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 35.41 | 30.85 |
| EES06150 | Sorghum | nucleus | 35.02 | 30.1 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 33.85 | 30.0 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 35.8 | 29.87 |
| EES07547 | Sorghum | nucleus | 35.41 | 29.84 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 31.52 | 29.67 |
| Zm00001d014989_P001 | Maize | nucleus | 34.63 | 28.9 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 34.63 | 28.9 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 33.85 | 28.25 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 34.24 | 28.11 |
| CDX78493 | Canola | nucleus | 29.96 | 27.5 |
| CDX85684 | Canola | nucleus | 29.57 | 27.24 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 33.46 | 27.22 |
| CDY53970 | Canola | nucleus | 29.57 | 27.14 |
| CDX93504 | Canola | nucleus | 30.74 | 26.87 |
| CDX91158 | Canola | nucleus | 28.79 | 26.62 |
| CDY22635 | Canola | nucleus | 31.91 | 26.54 |
| CDY08409 | Canola | nucleus | 30.35 | 26.53 |
| CDY42172 | Canola | nucleus | 30.35 | 26.53 |
| CDY42171 | Canola | nucleus | 30.35 | 26.53 |
| CDY50901 | Canola | nucleus | 30.74 | 26.42 |
| CDY06359 | Canola | nucleus | 31.52 | 26.3 |
| CDY43404 | Canola | nucleus | 29.96 | 26.19 |
| CDY32188 | Canola | nucleus | 32.68 | 25.0 |
| CDY31082 | Canola | nucleus | 33.07 | 24.57 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 33.46 | 24.23 |
| CDY68301 | Canola | nucleus | 30.35 | 23.28 |
| CDY07124 | Canola | nucleus | 30.35 | 23.21 |
| CDY58217 | Canola | nucleus | 30.35 | 23.21 |
| CDX87038 | Canola | nucleus | 30.35 | 23.08 |
| CDY35982 | Canola | nucleus | 29.96 | 22.99 |
| CDX88230 | Canola | nucleus | 31.52 | 22.75 |
| CDX80576 | Canola | nucleus | 31.52 | 22.69 |
| CDX74013 | Canola | nucleus | 29.96 | 22.65 |
| CDY70536 | Canola | nucleus | 29.96 | 22.45 |
| CDY27999 | Canola | nucleus | 29.18 | 22.39 |
| CDY39077 | Canola | nucleus | 29.96 | 21.57 |
| CDX97209 | Canola | nucleus | 29.57 | 21.47 |
| CDY37496 | Canola | nucleus | 29.57 | 21.29 |
| CDY38211 | Canola | nucleus | 29.57 | 20.6 |
| CDY08343 | Canola | nucleus | 29.57 | 20.6 |
| CDY55231 | Canola | nucleus | 26.07 | 20.43 |
| CDY25547 | Canola | nucleus | 29.18 | 20.27 |
| CDX97526 | Canola | nucleus | 26.07 | 19.76 |
| CDY34386 | Canola | extracellular | 12.06 | 10.33 |
| CDY70493 | Canola | cytosol, plastid | 3.11 | 6.06 |
| CDY70602 | Canola | nucleus, plastid | 3.11 | 5.13 |
| CDY05517 | Canola | plastid | 1.56 | 2.34 |
Protein Annotations
| EnsemblPlants:CDX94440 | EnsemblPlantsGene:GSBRNA2T00157585001 | Gene3D:1.10.10.60 | GO:A0A078DYK9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF943 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX94440 | ProteinID:CDX94440.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDC71D | MapMan:15.5.2.1 | : |
Description
BnaC01g17440D
Coordinates
chrLK031881:-:1165567..1166548
Molecular Weight (calculated)
29736.8 Da
IEP (calculated)
7.308
GRAVY (calculated)
-0.828
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTKSGEML KERQRKGFWS PEEDEKLRRF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI NYLRPGLKRD MISAEEEEII LTFHSSLGNK WSKIAQYLPG
101: RTDNEIKNYW HSHLKKRWLK PPSIERNPQT LVSNHVISFQ GLPDKTSSSP SEESNNNYLC SSGPEIPRLF FSEWFSSSDL TDSNHNHAPS IEGTISDYQE
201: SGDVDRFHYN NMMMNNSNWT LEDIVFGSKC QKQEHNVDRE GLDCNSSDIL FSSSIMM
101: RTDNEIKNYW HSHLKKRWLK PPSIERNPQT LVSNHVISFQ GLPDKTSSSP SEESNNNYLC SSGPEIPRLF FSEWFSSSDL TDSNHNHAPS IEGTISDYQE
201: SGDVDRFHYN NMMMNNSNWT LEDIVFGSKC QKQEHNVDRE GLDCNSSDIL FSSSIMM
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.