Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G060610.3 | Barley | nucleus | 80.27 | 58.12 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 71.75 | 54.24 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 69.51 | 54.01 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 71.3 | 53.9 |
| Zm00001d017383_P001 | Maize | nucleus | 56.5 | 43.3 |
| EES07547 | Sorghum | nucleus | 58.3 | 42.62 |
| Solyc01g009650.1.1 | Tomato | nucleus | 17.04 | 41.76 |
| Zm00001d051267_P001 | Maize | nucleus | 50.67 | 40.65 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 52.47 | 38.49 |
| Bra013900.1-P | Field mustard | nucleus | 32.74 | 33.95 |
| KRH35334 | Soybean | nucleus | 35.87 | 29.63 |
| KRH09018 | Soybean | nucleus | 38.12 | 29.21 |
| CDY32589 | Canola | nucleus | 32.74 | 29.08 |
| PGSC0003DMT400037080 | Potato | nucleus | 35.87 | 28.78 |
| KRH38485 | Soybean | nucleus | 37.22 | 28.52 |
| CDY38910 | Canola | nucleus | 33.63 | 28.09 |
| Bra029129.1-P | Field mustard | nucleus | 33.63 | 28.09 |
| AT5G52260.1 | Thale cress | nucleus | 33.63 | 27.99 |
| Solyc03g025870.2.1 | Tomato | nucleus | 34.98 | 27.96 |
| CDY50197 | Canola | nucleus | 30.94 | 27.6 |
| CDY64708 | Canola | nucleus | 31.84 | 27.52 |
| Bra018027.1-P | Field mustard | nucleus | 31.84 | 27.52 |
| CDX94440 | Canola | nucleus | 30.94 | 26.85 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 37.67 | 26.84 |
| CDY05881 | Canola | nucleus | 30.94 | 26.74 |
| CDX92718 | Canola | nucleus | 31.39 | 26.72 |
| CDX89413 | Canola | nucleus | 32.29 | 26.67 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 35.43 | 26.51 |
| AT4G25560.1 | Thale cress | nucleus | 33.63 | 26.5 |
| AT3G48920.1 | Thale cress | nucleus | 29.15 | 24.9 |
| KRG91494 | Soybean | nucleus | 36.77 | 24.62 |
| HORVU3Hr1G066860.11 | Barley | nucleus | 30.94 | 23.47 |
| HORVU3Hr1G047290.2 | Barley | nucleus | 26.46 | 19.47 |
| HORVU3Hr1G016940.1 | Barley | nucleus | 24.66 | 19.23 |
| HORVU7Hr1G072450.2 | Barley | nucleus | 26.91 | 17.6 |
| HORVU7Hr1G082020.1 | Barley | nucleus | 27.35 | 17.43 |
| HORVU1Hr1G079040.4 | Barley | nucleus, plastid | 26.46 | 16.76 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 30.49 | 15.85 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 26.91 | 15.71 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 26.91 | 15.71 |
| Bra019154.1-P | Field mustard | nucleus | 31.39 | 15.18 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 28.7 | 13.79 |
| HORVU1Hr1G079030.2 | Barley | nucleus | 20.18 | 9.49 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G060600.2 | EnsemblPlantsGene:HORVU6Hr1G060600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:IPR017930 | InterPro:Myb-like_dom | InterPro:Myb_dom |
| InterPro:SANT/Myb | ncoils:Coil | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS50090 |
| PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | MapMan:15.5.2.1 | : |
Description
No Description!
Coordinates
chrchr6H:+:403521994..403524010
Molecular Weight (calculated)
20553.9 Da
IEP (calculated)
10.016
GRAVY (calculated)
-0.664
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRKRNAHWI TGVNQNSPAR RAGLQRNGKS CRLRWINYLR PGLKHGMFSP EEEETVMSLH AALGNKWSRI ARHLPGRTDN EVKNYWNSYL KKRVEGGKGA
101: PNSPTPAAAS SAADSDGSQS PSPGEVISTV QERASRPSNS AGSSEPPHES SSADSSCLTV TEPPACRAYA PVAPKVMFAD WLNMDXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXH LST
101: PNSPTPAAAS SAADSDGSQS PSPGEVISTV QERASRPSNS AGSSEPPHES SSADSSCLTV TEPPACRAYA PVAPKVMFAD WLNMDXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXH LST
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.