Factsheet for AT4G25560.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50197	Canola	nucleus	68.9	78.0
CDX89413	Canola	nucleus	73.85	77.41
CDX92718	Canola	nucleus	71.38	77.1
CDX94440	Canola	nucleus	69.26	76.26
Bra013900.1-P	Field mustard	nucleus	55.48	73.02
Solyc01g009650.1.1	Tomato	nucleus	20.49	63.74
AT5G52260.1	Thale cress	nucleus	59.72	63.06
GSMUA_Achr4P25340_001	Banana	nucleus	27.92	55.63
Bra019154.1-P	Field mustard	nucleus	73.14	44.9
AT3G48920.1	Thale cress	nucleus	36.4	39.46
TraesCS2A01G370700.1	Wheat	nucleus	38.16	38.99
KRH35334	Soybean	nucleus	37.1	38.89
KRH09018	Soybean	nucleus	39.93	38.83
TraesCS2B01G387800.1	Wheat	nucleus	38.16	38.71
KRH38485	Soybean	nucleus	39.58	38.49
Os04t0532800-01	Rice	nucleus	37.1	38.46
TraesCS2A01G370300.1	Wheat	nucleus	37.46	38.27
TraesCS2B01G387500.1	Wheat	nucleus	38.16	38.16
TraesCS2D01G366800.1	Wheat	nucleus	37.1	38.04
TraesCS2B01G387300.1	Wheat	nucleus	36.75	37.96
TraesCS2D01G366900.1	Wheat	nucleus	37.81	37.81
TraesCS2A01G370400.1	Wheat	nucleus	37.81	37.81
TraesCS2D01G367000.1	Wheat	nucleus	37.1	37.37
PGSC0003DMT400037080	Potato	nucleus	36.4	37.05
TraesCS2B01G387700.1	Wheat	nucleus	35.69	36.86
VIT_16s0050g00050.t01	Wine grape	nucleus	38.52	36.58
Solyc03g025870.2.1	Tomato	nucleus	34.98	35.48
GSMUA_Achr4P11960_001	Banana	nucleus	30.74	35.37
GSMUA_Achr8P11340_001	Banana	nucleus	33.92	34.53
TraesCS6A01G236700.1	Wheat	nucleus	34.98	34.49
GSMUA_Achr4P29410_001	Banana	nucleus	33.92	34.41
Zm00001d017383_P001	Maize	nucleus	34.63	33.68
HORVU6Hr1G060600.2	Barley	mitochondrion	26.5	33.63
TraesCS6B01G265200.1	Wheat	nucleus	34.98	33.56
GSMUA_Achr1P17480_001	Banana	nucleus	32.16	33.33
HORVU2Hr1G091590.1	Barley	nucleus	35.69	33.22
EES11177	Sorghum	nucleus	34.98	33.22
TraesCS6D01G219300.1	Wheat	nucleus	34.63	33.22
GSMUA_Achr2P11450_001	Banana	nucleus	36.04	33.12
Zm00001d051267_P001	Maize	nucleus	32.51	33.09
HORVU6Hr1G060610.3	Barley	nucleus	34.98	32.14
GSMUA_Achr4P05410_001	Banana	nucleus	32.51	31.72
EES06150	Sorghum	nucleus	33.22	31.44
KRG91494	Soybean	nucleus	36.75	31.23
EES07547	Sorghum	nucleus	33.57	31.15
Zm00001d014989_P001	Maize	nucleus	32.86	30.19
TraesCS6B01G053100.1	Wheat	nucleus	31.8	29.22
HORVU6Hr1G007010.2	Barley	nucleus	32.16	29.07
AT5G12870.1	Thale cress	nucleus	28.27	28.57
TraesCS6D01G043600.1	Wheat	nucleus	31.8	28.48
AT1G57560.1	Thale cress	nucleus	30.04	27.07
AT3G12720.1	Thale cress	nucleus	27.92	25.73
TraesCS6A01G037700.1	Wheat	nucleus	31.8	25.35
AT5G26660.1	Thale cress	nucleus	30.39	24.43
AT1G09540.1	Thale cress	nucleus	31.45	24.32
AT4G01680.2	Thale cress	nucleus	28.98	23.56
AT3G08500.1	Thale cress	nucleus	27.56	22.74
AT3G13890.1	Thale cress	nucleus	28.62	22.07
AT1G63910.1	Thale cress	nucleus	27.21	20.81

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:828661	UniProt:A0A178V3M0	ProteinID:AEE85077.1	EMBL:AF062867
ArrayExpress:AT4G25560	EnsemblPlantsGene:AT4G25560	RefSeq:AT4G25560	TAIR:AT4G25560	RefSeq:AT4G25560-TAIR-G	EnsemblPlants:AT4G25560.1
TAIR:AT4G25560.1	EMBL:AY519609	Symbol:AtMYB18	ProteinID:CAA18170.1	ProteinID:CAB81366.1	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628
GO:GO:0009639	GO:GO:0009719	GO:GO:0009751	GO:GO:0009987	GO:GO:0010017	GO:GO:0010018
GO:GO:0016607	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	RefSeq:NP_194286.1	ProteinID:OAP00910.1	PFAM:PF00249	PO:PO:0009005
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF943	UniProt:Q9M0K4	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000009FF0C	SEG:seg	:	:	:

Description

LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]

Coordinates

chr4:+:13052503..13053742

Molecular Weight (calculated)

32434.6 Da

IEP (calculated)

7.903

GRAVY (calculated)

-0.855

Length

283 amino acids

Sequence
(BLAST)

001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.