Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P20130_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | GSMUA_Achr3P20130_001 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | GSMUA_AchrUn_... | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009650.1.1 | Tomato | nucleus | 21.54 | 58.24 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 32.11 | 55.63 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 61.38 | 52.07 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 48.78 | 43.96 |
| Bra013900.1-P | Field mustard | nucleus | 33.33 | 38.14 |
| PGSC0003DMT400037080 | Potato | nucleus | 40.24 | 35.61 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 39.84 | 35.25 |
| KRH35334 | Soybean | nucleus | 38.62 | 35.19 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 39.84 | 35.13 |
| CDY50197 | Canola | nucleus | 34.96 | 34.4 |
| Solyc03g025870.2.1 | Tomato | nucleus | 38.62 | 34.05 |
| CDX92718 | Canola | nucleus | 35.77 | 33.59 |
| CDY32589 | Canola | nucleus | 34.15 | 33.47 |
| KRH38485 | Soybean | nucleus | 39.02 | 32.99 |
| CDX94440 | Canola | nucleus | 34.15 | 32.68 |
| KRH09018 | Soybean | nucleus | 38.62 | 32.65 |
| AT5G52260.1 | Thale cress | nucleus | 35.37 | 32.46 |
| CDY38910 | Canola | nucleus | 34.55 | 31.84 |
| Bra029129.1-P | Field mustard | nucleus | 34.55 | 31.84 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 38.21 | 31.54 |
| CDY64708 | Canola | nucleus | 32.93 | 31.4 |
| Bra018027.1-P | Field mustard | nucleus | 32.93 | 31.4 |
| CDX89413 | Canola | nucleus | 34.15 | 31.11 |
| AT4G25560.1 | Thale cress | nucleus | 35.37 | 30.74 |
| AT3G48920.1 | Thale cress | nucleus | 32.52 | 30.65 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 38.21 | 30.52 |
| GSMUA_Achr11P... | Banana | nucleus | 28.86 | 30.47 |
| CDY05881 | Canola | nucleus | 31.3 | 29.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.71 | 28.36 |
| KRG91494 | Soybean | nucleus | 38.21 | 28.23 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 31.71 | 27.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.49 | 26.5 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 31.3 | 25.93 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 28.86 | 25.45 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 31.71 | 25.41 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 31.3 | 25.08 |
| GSMUA_Achr10P... | Banana | nucleus | 30.08 | 24.92 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 30.08 | 24.75 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 30.49 | 24.59 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 30.89 | 24.44 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 30.08 | 24.18 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 32.11 | 24.16 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 32.52 | 23.95 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 30.49 | 23.81 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 30.49 | 23.51 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 30.08 | 23.49 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 32.52 | 23.32 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 32.11 | 22.97 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 32.52 | 21.33 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 30.89 | 21.11 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 30.89 | 21.11 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 31.3 | 21.1 |
| GSMUA_Achr11P... | Banana | nucleus | 32.11 | 21.07 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 26.02 | 20.65 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 30.08 | 20.0 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 30.89 | 19.95 |
| Bra019154.1-P | Field mustard | nucleus | 34.96 | 18.66 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr4G11960_001 | EnsemblPlants:GSMUA_Achr4P11960_001 | EnsemblPlants:GSMUA_Achr4T11960_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0SN61 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF563 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000294C990 | : | : | : |
Description
Putative Transcription factor LAF1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11960_001]
Coordinates
chr4:+:8728787..8730534
Molecular Weight (calculated)
28394.8 Da
IEP (calculated)
8.218
GRAVY (calculated)
-0.636
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMEYKSCKQ PEVNYRKGLW SPDEDQKLRD YILMHGVSCW SAVPAKAGEL FLHLAHGLRR NRKSCRLRWI NYLRPGLKRG KLSLQEEETI LKLQSKIGNN
101: KMTCLMLAMW SLIALHLPGR TDNEVKNYWN SYLKQKTSKP QESDTHSLKH SALNLSIPRL TKLEEQNDHI LSCLEDSEQS VTPSTGDGSP KGMAADHLPK
201: VLFADWFSFE QDNWESLFNL DDVRSSQVDD AIVLNGFKFS NTYNDF
101: KMTCLMLAMW SLIALHLPGR TDNEVKNYWN SYLKQKTSKP QESDTHSLKH SALNLSIPRL TKLEEQNDHI LSCLEDSEQS VTPSTGDGSP KGMAADHLPK
201: VLFADWFSFE QDNWESLFNL DDVRSSQVDD AIVLNGFKFS NTYNDF
001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
Arabidopsis Description
AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.