Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 18.56 | 84.93 |
| CDY05331 | Canola | nucleus | 32.93 | 83.33 |
| CDY05516 | Canola | nucleus | 32.63 | 82.58 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 69.76 | 64.72 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 24.85 | 58.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.6 | 57.82 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 48.8 | 57.6 |
| GSMUA_Achr11P... | Banana | nucleus | 38.62 | 55.36 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 53.89 | 52.33 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 45.51 | 49.51 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 52.99 | 47.84 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 52.1 | 47.67 |
| CDY22635 | Canola | nucleus | 43.71 | 47.25 |
| CDY06359 | Canola | nucleus | 42.81 | 46.43 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 51.8 | 46.13 |
| Bra031669.1-P | Field mustard | nucleus | 44.31 | 45.26 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 46.11 | 44.9 |
| AT1G57560.1 | Thale cress | nucleus | 41.32 | 43.95 |
| CDX93504 | Canola | nucleus | 38.62 | 43.88 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 46.71 | 43.33 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 49.4 | 43.31 |
| GSMUA_Achr11P... | Banana | nucleus | 48.5 | 43.2 |
| Zm00001d040527_P001 | Maize | nucleus | 36.23 | 43.06 |
| CDY50901 | Canola | nucleus | 38.32 | 42.81 |
| Zm00001d024784_P001 | Maize | nucleus | 32.04 | 41.8 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 38.32 | 41.69 |
| Bra020016.1-P | Field mustard | nucleus | 41.32 | 41.57 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 38.02 | 40.32 |
| PGSC0003DMT400047076 | Potato | nucleus | 50.6 | 39.67 |
| Solyc01g102340.2.1 | Tomato | nucleus | 50.3 | 39.44 |
| CDY32188 | Canola | nucleus | 39.52 | 39.29 |
| Bra030783.1-P | Field mustard | nucleus | 40.12 | 38.84 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 35.33 | 38.56 |
| CDY31082 | Canola | nucleus | 39.82 | 38.44 |
| CDX87038 | Canola | nucleus | 38.62 | 38.17 |
| AT1G09540.1 | Thale cress | nucleus | 41.62 | 37.98 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 51.2 | 37.92 |
| Bra036588.1-P | Field mustard | nucleus | 38.02 | 37.91 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 49.7 | 37.81 |
| EES02806 | Sorghum | nucleus | 48.2 | 37.7 |
| Os05t0140100-01 | Rice | nucleus | 48.2 | 37.7 |
| CDY68301 | Canola | nucleus | 37.72 | 37.61 |
| Os01t0285300-01 | Rice | nucleus | 47.9 | 37.38 |
| KRH68389 | Soybean | nucleus | 46.71 | 37.32 |
| KRH68350 | Soybean | nucleus | 46.71 | 37.32 |
| KRH69136 | Soybean | nucleus | 48.2 | 37.1 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 33.83 | 37.05 |
| OQU77376 | Sorghum | nucleus | 47.6 | 36.98 |
| PGSC0003DMT400040774 | Potato | nucleus | 44.91 | 36.85 |
| Zm00001d010907_P001 | Maize | nucleus | 47.01 | 36.85 |
| KRH33726 | Soybean | nucleus | 47.31 | 36.83 |
| KRG96660 | Soybean | nucleus | 47.6 | 36.64 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 47.01 | 36.6 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 47.01 | 36.6 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 47.01 | 36.51 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 47.01 | 36.43 |
| KRG90431 | Soybean | nucleus | 46.41 | 36.22 |
| Solyc10g044680.1.1 | Tomato | nucleus | 43.11 | 36.18 |
| AT5G26660.1 | Thale cress | nucleus | 38.02 | 36.08 |
| CDY58217 | Canola | nucleus | 36.23 | 36.01 |
| CDY07124 | Canola | nucleus | 36.23 | 36.01 |
| Bra036317.1-P | Field mustard | nucleus | 36.23 | 36.01 |
| KRH33667 | Soybean | nucleus | 49.1 | 35.96 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 31.74 | 35.45 |
| CDX88230 | Canola | nucleus | 37.72 | 35.39 |
| CDX80576 | Canola | nucleus | 37.72 | 35.29 |
| AT4G01680.2 | Thale cress | nucleus | 36.23 | 34.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.34 | 34.63 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 32.04 | 34.52 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 28.74 | 34.41 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 33.23 | 33.95 |
| GSMUA_Achr10P... | Banana | nucleus | 29.94 | 33.67 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 30.54 | 32.8 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 23.95 | 32.52 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 26.65 | 31.9 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 28.14 | 31.65 |
| KRG96619 | Soybean | plastid, vacuole | 46.71 | 31.52 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 29.94 | 31.35 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 26.05 | 31.3 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 29.04 | 30.79 |
| Bra009910.1-P | Field mustard | nucleus | 30.24 | 30.61 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 24.55 | 30.04 |
| Bra020526.1-P | Field mustard | nucleus | 36.53 | 27.73 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 23.95 | 27.59 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 25.15 | 27.27 |
| CDY05517 | Canola | plastid | 3.59 | 7.02 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P18990_001 | EnsemblPlants:GSMUA_Achr1T18990_001 | EnsemblPlantsGene:GSMUA_Achr1G18990_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000294975A | UniProt:M0S157 | MapMan:15.5.2.1 | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G18990_001]
Coordinates
chr1:-:14167062..14168225
Molecular Weight (calculated)
37330.5 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.721
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPD EDEKLVKHIT EFGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGTF SQQEEDLIVE LHAALGNRWS QIAARLPGRT
101: DNEIKNYWNS CIKKKLRQRG IDPSSHMPLC ETDGREEREA MNSDKTSGFI SVVASNQIES EDPATPSKEF LVDQLDRCAP LVGPSAPQNP PLWFSHHTRL
201: QDLFPSISSS ILSSSGEVKP MTSLPQVSYS LPEFHYLDTG NSTNNSANTA DSSNEFELQS SGGNLLDSGI FPWSELLPNK GAQIHFDGEP QDLKWSEYLN
301: GTIAPTAAAH SHGQGLSSWH ENQQPQPSDP YLKN
101: DNEIKNYWNS CIKKKLRQRG IDPSSHMPLC ETDGREEREA MNSDKTSGFI SVVASNQIES EDPATPSKEF LVDQLDRCAP LVGPSAPQNP PLWFSHHTRL
201: QDLFPSISSS ILSSSGEVKP MTSLPQVSYS LPEFHYLDTG NSTNNSANTA DSSNEFELQS SGGNLLDSGI FPWSELLPNK GAQIHFDGEP QDLKWSEYLN
301: GTIAPTAAAH SHGQGLSSWH ENQQPQPSDP YLKN
001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL
Arabidopsis Description
MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.