Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05516 | Canola | nucleus | 32.65 | 84.85 |
| CDY05331 | Canola | nucleus | 32.36 | 84.09 |
| Zm00001d008206_P001 | Maize | nucleus | 17.78 | 83.56 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 68.22 | 65.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.36 | 57.82 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 23.32 | 56.34 |
| GSMUA_Achr11P... | Banana | nucleus | 38.19 | 56.22 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 44.02 | 53.36 |
| CDY22635 | Canola | nucleus | 43.73 | 48.54 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 51.6 | 48.49 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 52.19 | 48.38 |
| CDY06359 | Canola | nucleus | 43.44 | 48.38 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 53.35 | 48.03 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 47.81 | 47.67 |
| Bra031669.1-P | Field mustard | nucleus | 45.19 | 47.4 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 42.27 | 47.23 |
| AT1G57560.1 | Thale cress | nucleus | 43.15 | 47.13 |
| CDX93504 | Canola | nucleus | 39.65 | 46.26 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 48.4 | 46.11 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 44.9 | 46.11 |
| CDY50901 | Canola | nucleus | 39.65 | 45.48 |
| Zm00001d040527_P001 | Maize | nucleus | 35.86 | 43.77 |
| Zm00001d024784_P001 | Maize | nucleus | 32.65 | 43.75 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 47.81 | 43.73 |
| GSMUA_Achr11P... | Banana | nucleus | 47.81 | 43.73 |
| Bra020016.1-P | Field mustard | nucleus | 41.98 | 43.37 |
| CDY32188 | Canola | nucleus | 41.69 | 42.56 |
| Bra030783.1-P | Field mustard | nucleus | 42.27 | 42.03 |
| CDY31082 | Canola | nucleus | 42.27 | 41.91 |
| AT1G09540.1 | Thale cress | nucleus | 44.02 | 41.26 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 36.73 | 41.04 |
| CDY68301 | Canola | nucleus | 39.65 | 40.6 |
| Bra036588.1-P | Field mustard | nucleus | 39.65 | 40.6 |
| CDX87038 | Canola | nucleus | 39.94 | 40.53 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 36.15 | 40.52 |
| EES02806 | Sorghum | nucleus | 50.44 | 40.52 |
| Os01t0285300-01 | Rice | nucleus | 50.44 | 40.42 |
| PGSC0003DMT400047076 | Potato | nucleus | 49.85 | 40.14 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 51.02 | 39.86 |
| Os05t0140100-01 | Rice | nucleus | 49.56 | 39.81 |
| Solyc01g102340.2.1 | Tomato | nucleus | 49.27 | 39.67 |
| KRG96660 | Soybean | nucleus | 49.85 | 39.4 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 36.15 | 39.37 |
| AT5G26660.1 | Thale cress | nucleus | 40.23 | 39.2 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 48.98 | 39.16 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 48.98 | 39.07 |
| PGSC0003DMT400040774 | Potato | nucleus | 46.36 | 39.07 |
| Zm00001d010907_P001 | Maize | nucleus | 48.4 | 38.97 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 48.69 | 38.93 |
| OQU77376 | Sorghum | nucleus | 48.69 | 38.84 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 51.02 | 38.8 |
| KRH68389 | Soybean | nucleus | 47.23 | 38.76 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 48.4 | 38.52 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 34.11 | 38.36 |
| Solyc10g044680.1.1 | Tomato | nucleus | 44.31 | 38.19 |
| CDX88230 | Canola | nucleus | 39.36 | 37.92 |
| KRG90431 | Soybean | nucleus | 47.23 | 37.85 |
| CDX80576 | Canola | nucleus | 39.36 | 37.82 |
| KRH33726 | Soybean | nucleus | 47.23 | 37.76 |
| KRH68350 | Soybean | nucleus | 45.19 | 37.08 |
| KRH69136 | Soybean | nucleus | 46.06 | 36.41 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 29.45 | 36.2 |
| CDY58217 | Canola | nucleus | 35.28 | 36.01 |
| Bra036317.1-P | Field mustard | nucleus | 35.28 | 36.01 |
| CDY07124 | Canola | nucleus | 35.28 | 36.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.45 | 35.69 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 30.9 | 35.45 |
| AT4G01680.2 | Thale cress | nucleus | 35.57 | 35.06 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 28.28 | 34.77 |
| KRH33667 | Soybean | nucleus | 45.48 | 34.21 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 30.32 | 33.55 |
| Bra009910.1-P | Field mustard | nucleus | 31.78 | 33.03 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 29.74 | 32.8 |
| GSMUA_Achr10P... | Banana | nucleus | 28.28 | 32.66 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 28.28 | 32.66 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 23.32 | 32.52 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 26.24 | 32.37 |
| KRG96619 | Soybean | plastid, vacuole | 45.19 | 31.31 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 29.74 | 31.19 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 28.86 | 31.03 |
| Bra020526.1-P | Field mustard | nucleus | 39.07 | 30.45 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 24.2 | 30.4 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 27.11 | 29.52 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 24.2 | 28.62 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 25.66 | 28.57 |
| CDY05517 | Canola | plastid | 5.25 | 10.53 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P17250_001 | EnsemblPlants:GSMUA_Achr7T17250_001 | EnsemblPlantsGene:GSMUA_Achr7G17250_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002958600 | UniProt:M0TIB2 | MapMan:15.5.2.1 | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G17250_001]
Coordinates
chr7:+:19039980..19041587
Molecular Weight (calculated)
37897.3 Da
IEP (calculated)
6.591
GRAVY (calculated)
-0.555
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHTCCHKQ KLRKGLWSPE EDEKLIKHIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SDQEEDLIIE LHAVLGNRWS QIATRLPGRT
101: DNEIKNLWNS CIKKKLKQRG IDPNTHKPLA EAEASEDQAS KSSERTSSSC DLKVPIATLE STTDAVRTSS SMPISQAATA GLSVCPNPYG RLFEMNQDSS
201: CNTLSTGFPS TPTAVISTSM GVRTNINLPL YNPAHVCAGI DGIRYSDAVY SSNTSQSSIS SVGGIEMQNS SPFFDNGFFP WSELTPDTDT QVQLEGEPED
301: LKWSEYLEGG FPSDVGTWHQ HQLQSPDVYG KDFRISSVGF GQV
101: DNEIKNLWNS CIKKKLKQRG IDPNTHKPLA EAEASEDQAS KSSERTSSSC DLKVPIATLE STTDAVRTSS SMPISQAATA GLSVCPNPYG RLFEMNQDSS
201: CNTLSTGFPS TPTAVISTSM GVRTNINLPL YNPAHVCAGI DGIRYSDAVY SSNTSQSSIS SVGGIEMQNS SPFFDNGFFP WSELTPDTDT QVQLEGEPED
301: LKWSEYLEGG FPSDVGTWHQ HQLQSPDVYG KDFRISSVGF GQV
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.