Factsheet for Os01t0285300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 24089432

gfp PMID: 24089432 doi

K Hirano, M Kondo, K Aya, A Miyao, Y Sato, BA Antonio, N Namiki, Y Nagamura, M Matsuoka

Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0587000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26660.1	Os01t0587000-01	AT3G28715.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008206_P001	Maize	nucleus	16.36	95.89
CDY05331	Canola	nucleus	27.1	87.88
CDY05516	Canola	nucleus	26.87	87.12
EES02806	Sorghum	nucleus	84.58	84.78
Zm00001d040527_P001	Maize	nucleus	54.91	83.63
Os05t0140100-01	Rice	nucleus	75.0	75.18
GSMUA_AchrUn_...	Banana	nucleus	37.38	58.18
GSMUA_Achr11P...	Banana	nucleus	30.84	56.65
CDX93504	Canola	nucleus	36.92	53.74
CDY06359	Canola	nucleus	37.62	52.27
CDY50901	Canola	nucleus	36.45	52.17
CDY22635	Canola	nucleus	37.15	51.46
GSMUA_Achr4P19560_001	Banana	nucleus	33.88	51.24
Bra031669.1-P	Field mustard	nucleus	38.78	50.76
Bra030783.1-P	Field mustard	nucleus	40.89	50.72
CDY32188	Canola	nucleus	39.72	50.6
GSMUA_Achr7P17250_001	Banana	nucleus	40.42	50.44
CDY31082	Canola	nucleus	40.65	50.29
GSMUA_Achr2P01830_001	Banana	nucleus	35.98	50.16
AT1G57560.1	Thale cress	nucleus	36.68	50.0
Bra020016.1-P	Field mustard	nucleus	38.78	50.0
GSMUA_Achr2P18440_001	Banana	nucleus	41.36	48.49
GSMUA_Achr8P18730_001	Banana	nucleus	41.82	48.38
Bra036588.1-P	Field mustard	nucleus	37.85	48.36
GSMUA_Achr3P12200_001	Banana	nucleus	40.65	48.33
CDY68301	Canola	nucleus	37.62	48.06
GSMUA_Achr1P18990_001	Banana	nucleus	37.38	47.9
GSMUA_Achr5P18400_001	Banana	nucleus	41.82	47.73
GSMUA_Achr3P24580_001	Banana	nucleus	38.32	47.67
CDX87038	Canola	nucleus	37.62	47.63
GSMUA_Achr1P25120_001	Banana	nucleus	39.95	47.5
AT1G09540.1	Thale cress	nucleus	40.19	46.99
AT5G26660.1	Thale cress	nucleus	38.08	46.31
CDX80576	Canola	nucleus	38.08	45.66
CDX88230	Canola	nucleus	37.85	45.51
GSMUA_Achr2P07930_001	Banana	nucleus	39.72	44.62
GSMUA_Achr11P...	Banana	nucleus	38.78	44.27
VIT_14s0060g00240.t01	Wine grape	nucleus	44.39	43.28
KRG90431	Soybean	nucleus	43.22	43.22
Os05t0543600-01	Rice	nucleus	31.07	42.63
KRH33726	Soybean	nucleus	42.52	42.42
Os01t0702700-01	Rice	nucleus	29.67	42.19
KRH68389	Soybean	nucleus	40.65	41.63
KRG96660	Soybean	nucleus	41.59	41.01
Bra009910.1-P	Field mustard	nucleus	31.54	40.91
PGSC0003DMT400040774	Potato	nucleus	38.55	40.54
Solyc10g044680.1.1	Tomato	nucleus	37.38	40.2
PGSC0003DMT400047076	Potato	nucleus	39.02	39.2
Solyc01g102340.2.1	Tomato	nucleus	38.78	38.97
Os01t0709000-01	Rice	nucleus	27.1	37.78
Os03t0371800-00	Rice	nucleus	32.71	35.18
Os04t0532800-01	Rice	nucleus	22.2	34.8
Bra020526.1-P	Field mustard	nucleus	35.51	34.55
Os08t0151300-01	Rice	nucleus	24.07	28.69
Os07t0497500-00	Rice	nucleus	25.7	27.5
Os07t0634900-00	Rice	plastid	17.76	21.05
CDY05517	Canola	plastid	7.24	18.13
Os12t0515300-00	Rice	nucleus	11.92	16.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4327914	EMBL:AK111803	ProteinID:BAB39972.1	ProteinID:BAB39987.1
ProteinID:BAF04687.1	ProteinID:BAS71623.1	ProteinID:EAZ11477.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010119	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os01g0285300	EnsemblPlants:Os01t0285300-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF465	UniProt:Q9AQV2	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00000A49CF	RefSeq:XP_015627109.1	SEG:seg	:	:

Description

myb transcription factor 55/61, transcription factor MYB55/61Myb transcription factor domain containing protein. (Os01t0285300-01)

Coordinates

chr1:-:10217782..10219691

Molecular Weight (calculated)

47738.9 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.671

Length

428 amino acids

Sequence
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQEEEDLIVE LHAVLGNRWS QIATRLPGRT
101: DNEIKNLWNS CIKKKLRQKG IDPNTHKPLA EVDRSKATPT ISNDRTSESS DVDPSSGVAL HNLSHLLSET AQSSELLPVK VTKPRTQAPG LARLKVPPKE
201: LFLDQLTSGH ENLPSCRSSG PIPNFPFQQL LCYNNDFNSM DVGNRNSLWY NQNESSSSTI STVMPPVSPS TLSTSTGLNP SPDNANSRGT GIHNSQFYWD
301: TNNPSSSSST GSSGNNGLGF ELQSTSSLLE TNIFPWSDLA PEKDSQAQLE EELKWPDLLH GTFSEMPAPM QNLSQSLYED VVKAESQFNM EGLCAAWSQN
401: LLPQQHLPVV SDMYDKDLQR MSLSFENI

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.