Factsheet for Bra009910.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88230	Canola	nucleus	98.18	91.01
CDX80576	Canola	nucleus	96.67	89.36
AT5G26660.1	Thale cress	nucleus	82.42	77.27
Bra036588.1-P	Field mustard	nucleus	75.76	74.63
Zm00001d008206_P001	Maize	nucleus	12.42	56.16
Bra020526.1-P	Field mustard	nucleus	73.64	55.23
GSMUA_AchrUn_...	Banana	nucleus	30.3	36.36
GSMUA_Achr11P...	Banana	nucleus	25.45	36.05
GSMUA_Achr4P19560_001	Banana	nucleus	29.39	34.28
Bra031669.1-P	Field mustard	nucleus	31.82	32.11
GSMUA_Achr7P17250_001	Banana	nucleus	33.03	31.78
Zm00001d024784_P001	Maize	nucleus	24.55	31.64
Os01t0285300-01	Rice	nucleus	40.91	31.54
Zm00001d010907_P001	Maize	nucleus	40.61	31.46
Bra020016.1-P	Field mustard	nucleus	31.52	31.33
Os05t0140100-01	Rice	nucleus	40.3	31.15
GSMUA_Achr2P01830_001	Banana	nucleus	28.79	30.94
OQU77376	Sorghum	nucleus	40.3	30.93
Bra030783.1-P	Field mustard	nucleus	32.12	30.72
EES02806	Sorghum	nucleus	39.7	30.68
HORVU1Hr1G017970.4	Barley	nucleus	39.39	30.3
GSMUA_Achr1P25120_001	Banana	nucleus	33.03	30.28
GSMUA_Achr1P18990_001	Banana	nucleus	30.61	30.24
TraesCS1B01G100600.1	Wheat	nucleus	39.09	29.93
TraesCS1D01G084400.1	Wheat	nucleus	38.79	29.84
TraesCS1A01G083100.2	Wheat	nucleus	38.79	29.77
GSMUA_Achr3P12200_001	Banana	nucleus	31.82	29.17
GSMUA_Achr3P24580_001	Banana	nucleus	30.3	29.07
GSMUA_Achr2P18440_001	Banana	nucleus	31.52	28.49
Bra036317.1-P	Field mustard	nucleus	28.79	28.27
KRH68389	Soybean	nucleus	35.76	28.23
KRH33726	Soybean	nucleus	36.67	28.21
KRG90431	Soybean	nucleus	36.06	27.8
Zm00001d040527_P001	Maize	nucleus	23.64	27.76
KRG96660	Soybean	nucleus	36.36	27.65
GSMUA_Achr5P18400_001	Banana	nucleus	30.91	27.2
GSMUA_Achr2P07930_001	Banana	nucleus	31.21	27.03
GSMUA_Achr8P18730_001	Banana	nucleus	30.0	26.76
VIT_14s0060g00240.t01	Wine grape	nucleus	35.45	26.65
Bra034738.1-P	Field mustard	nucleus	23.64	26.53
Bra013900.1-P	Field mustard	nucleus	17.27	26.51
GSMUA_Achr11P...	Banana	nucleus	30.0	26.4
Solyc10g044680.1.1	Tomato	nucleus	31.82	26.38
PGSC0003DMT400040774	Potato	nucleus	32.42	26.29
Bra008875.1-P	Field mustard	nucleus	22.12	26.07
Bra006166.1-P	Field mustard	nucleus	21.82	25.71
Bra039339.1-P	Field mustard	nucleus	22.73	25.51
Solyc01g102340.2.1	Tomato	nucleus	32.42	25.12
PGSC0003DMT400047076	Potato	nucleus	31.82	24.65
Bra029129.1-P	Field mustard	nucleus	19.7	24.34
Bra018027.1-P	Field mustard	nucleus	17.88	22.87
Bra029696.1-P	Field mustard	nucleus	23.03	22.82
Bra001284.1-P	Field mustard	nucleus	22.42	21.76
Bra021515.1-P	Field mustard	nucleus	23.03	21.35
Bra027389.1-P	Field mustard	nucleus	22.12	20.98
Bra027771.1-P	Field mustard	nucleus	22.73	20.49
Bra027668.1-P	Field mustard	nucleus	22.42	20.05
Bra023380.1-P	Field mustard	nucleus	10.3	16.35
Bra019154.1-P	Field mustard	nucleus	18.79	13.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra009910	EnsemblPlants:Bra009910.1	EnsemblPlants:Bra009910.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017930
UniProt:M4D0B2	InterPro:Myb-like_dom	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF474	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000253F428
SEG:seg	:	:	:	:	:

Description

AT5G26660 (E=2e-127) ATMYB4, ATMYB86 | ATMYB86 (MYB DOMAIN PROTEIN 86); specific transcriptional repressor/ transcription repressor

Coordinates

chrA06:-:18012596..18013803

Molecular Weight (calculated)

37458.0 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.649

Length

330 amino acids

Sequence
(BLAST)

001: MGRHSCCYKQ KQLMKSIPLL QRCGKSCRLR WINYLRPDLK RGAFSQEEES LIIELHAALG NRWSQIATRL PGRTDNEIKN FWNSCLKKKL RRKGIDPTTH
101: KPIISELQHN VIDQKLTSLN TSEVVKSTAS INNPHDQSMV VLSQPGPWWY PATATTTTAN QNAEFCFSSS TTQTVSDQIV SLISSMSTSS SPTPMTSNFN
201: PIPNNWELSY CNNTVPSHSN SIYSAFFGNH YKEATQIMNT NNNNILLDQH PHQDMKSWAP EILHYTEHNQ SSETGFEAEV KPDIAKYYWR SVSSSPSPNE
301: SAATLLHDAD VEFYGKNLQK PNIMAFDQRL

Best Arabidopsis Sequence Match ( AT5G26660.1 )
(BLAST)

001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL

Arabidopsis Description

MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.