Factsheet for Bra023380.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85684	Canola	nucleus	100.0	74.55
AT5G12870.1	Thale cress	nucleus	81.73	60.71
Bra006166.1-P	Field mustard	nucleus	81.25	60.36
Bra008875.1-P	Field mustard	nucleus	80.29	59.64
Bra029696.1-P	Field mustard	nucleus	30.29	18.92
Bra001284.1-P	Field mustard	nucleus	30.29	18.53
TraesCS5A01G101000.1	Wheat	nucleus	30.77	16.45
TraesCS5B01G105900.1	Wheat	nucleus	30.77	16.41
TraesCS5D01G113300.1	Wheat	nucleus	30.29	16.2
EES17106	Sorghum	nucleus	31.73	15.79
Bra013900.1-P	Field mustard	nucleus	14.42	13.95
Bra034738.1-P	Field mustard	nucleus	19.23	13.61
HORVU5Hr1G027750.1	Barley	nucleus	30.29	13.58
Bra031669.1-P	Field mustard	nucleus	20.19	12.84
Bra039339.1-P	Field mustard	nucleus	17.79	12.59
Bra029129.1-P	Field mustard	nucleus	15.87	12.36
Bra020016.1-P	Field mustard	nucleus	19.71	12.35
Bra018027.1-P	Field mustard	nucleus	14.9	12.02
Bra036588.1-P	Field mustard	nucleus	19.23	11.94
Bra030783.1-P	Field mustard	nucleus	19.71	11.88
Zm00001d023931_P001	Maize	nucleus	4.81	10.31
Bra009910.1-P	Field mustard	nucleus	16.35	10.3
Bra021515.1-P	Field mustard	nucleus	16.83	9.83
Bra027389.1-P	Field mustard	nucleus	16.35	9.77
Bra027771.1-P	Field mustard	nucleus	16.83	9.56
Bra036317.1-P	Field mustard	nucleus	15.38	9.52
Bra027668.1-P	Field mustard	nucleus	15.38	8.67
Bra020526.1-P	Field mustard	nucleus	17.79	8.41
Bra019154.1-P	Field mustard	nucleus	13.94	6.29

Protein Annotations

EnsemblPlants:Bra023380.1	EnsemblPlants:Bra023380.1-P	EnsemblPlantsGene:Bra023380	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF577	PFAM:PF00249	PFscan:PS51294	SEG:seg	SUPFAM:SSF46689
UniParc:UPI000254340F	UniProt:M4E3M7	MapMan:35.1	:	:	:

Description

AT5G12870 (E=3e-064) ATMYB46, MYB46 | MYB46 (MYB DOMAIN PROTEIN 46); DNA binding / transcription factor

Coordinates

chrA02:-:3099648..3101648

Molecular Weight (calculated)

23480.2 Da

IEP (calculated)

4.628

GRAVY (calculated)

-0.725

Length

208 amino acids

Sequence
(BLAST)

001: MRKPEVANVV THQVKKMKKG LWWSQIAARL PGRTDNEIKN FWNSTIKKRL KKLSDTSNSV NNSSSSPKAS DSSSNSTSSL EFKDIIGSFM SLQEQGFVNP
101: SFTNMPTNNN PFPAPQLISH PYNDDFPPYV DGFCGINTGV QGELYFPPLE CEEGDWYNAD ITNHLDDDMN TNGAGNVPEG VRMEEYWDLD QLMNTEAPSF
201: YFNFKQSI

Best Arabidopsis Sequence Match ( AT5G12870.1 )
(BLAST)

001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI

Arabidopsis Description

MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.