Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G101000.1 | Wheat | nucleus | 96.67 | 96.92 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 96.41 | 96.66 |
| Zm00001d023931_P001 | Maize | nucleus | 22.82 | 91.75 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 92.82 | 78.02 |
| EES17106 | Sorghum | nucleus | 65.13 | 60.77 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 38.72 | 54.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.44 | 51.59 |
| VIT_06s0004g02110.t01 | Wine grape | nucleus | 42.56 | 51.08 |
| PGSC0003DMT400018995 | Potato | nucleus | 45.64 | 50.71 |
| Solyc11g065840.1.1 | Tomato | nucleus | 45.13 | 49.86 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 37.95 | 49.83 |
| KRH24713 | Soybean | nucleus | 40.77 | 47.32 |
| KRH29717 | Soybean | nucleus | 41.03 | 47.06 |
| KRH23131 | Soybean | nucleus | 37.95 | 44.71 |
| KRH10204 | Soybean | nucleus | 38.21 | 44.61 |
| KRG93751 | Soybean | nucleus | 38.21 | 44.35 |
| CDY53970 | Canola | nucleus | 31.79 | 44.29 |
| CDX78493 | Canola | nucleus | 31.79 | 44.29 |
| Bra008875.1-P | Field mustard | nucleus | 31.79 | 44.29 |
| VIT_13s0064g00960.t01 | Wine grape | nucleus | 32.56 | 43.94 |
| Bra006166.1-P | Field mustard | nucleus | 31.54 | 43.93 |
| KRH27485 | Soybean | nucleus | 35.38 | 43.81 |
| KRH20828 | Soybean | nucleus | 34.87 | 43.73 |
| AT5G12870.1 | Thale cress | nucleus | 31.28 | 43.57 |
| CDX85684 | Canola | nucleus | 31.03 | 43.37 |
| CDX91158 | Canola | nucleus | 30.77 | 43.17 |
| KRH18309 | Soybean | nucleus | 37.69 | 43.11 |
| PGSC0003DMT400017709 | Potato | nucleus | 36.41 | 40.0 |
| Solyc01g087130.2.1 | Tomato | nucleus | 35.9 | 39.77 |
| TraesCS2B01G178000.1 | Wheat | nucleus | 19.49 | 38.97 |
| CDX97209 | Canola | nucleus | 31.79 | 35.03 |
| TraesCS3B01G286500.1 | Wheat | nucleus | 24.87 | 34.52 |
| TraesCS1B01G383800.1 | Wheat | nucleus | 25.13 | 34.03 |
| TraesCS1B01G383700.1 | Wheat | nucleus | 25.38 | 33.79 |
| TraesCS1B01G383600.1 | Wheat | nucleus | 26.41 | 33.77 |
| TraesCS1B01G383900.1 | Wheat | nucleus | 24.62 | 33.22 |
| Bra023380.1-P | Field mustard | nucleus | 16.41 | 30.77 |
| TraesCS3B01G224500.1 | Wheat | nucleus | 24.36 | 30.65 |
| TraesCS7B01G244200.1 | Wheat | nucleus | 22.05 | 29.66 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 20.77 | 29.56 |
| TraesCS4B01G312100.1 | Wheat | nucleus | 19.74 | 29.5 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 20.77 | 29.03 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 20.26 | 28.83 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 20.77 | 28.62 |
| TraesCS3B01G280700.1 | Wheat | nucleus | 20.0 | 27.27 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 20.51 | 27.12 |
| TraesCS3B01G109800.1 | Wheat | nucleus | 19.74 | 27.11 |
| TraesCS2B01G177900.1 | Wheat | nucleus | 24.87 | 26.87 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 21.03 | 26.62 |
| TraesCS7B01G204800.1 | Wheat | nucleus | 22.31 | 25.22 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 27.69 | 25.06 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 23.33 | 23.82 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G105900.1 | EnsemblPlantsGene:TraesCS5B01G105900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF577 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:142244605..142246847
Molecular Weight (calculated)
42255.5 Da
IEP (calculated)
6.886
GRAVY (calculated)
-0.551
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKPVECPAT KCSGGAAPGN SNVAAAAAKL RKGLWSPEED ERLVAYMLRS GQGSWSDVAR NAGLQRCGKS CRLRWINYLR PDLKRGAFSP QEEDLIVNLH
101: AILGNRWSQI AARLPGRTDN EIKNFWNSTI KKRLKMNSAA SSPATTECAS PPEPKLDGGS ASCLDLTSLE DGSHHGMKSM WRIDSSSSPS SSSSIQQQSR
201: PSTMAPAANR GYGGLLLPLP NQFCGVAPST DTSVPPFFHD HSSFKQVSPL RTGGYYPHGM AMERGGGSCF TGEEAVGGGG EHSVLFNVPP LLEPMAVTLQ
301: DQTLMAATGN SDDNHRNINS TAEGTTLSSK NGCNINDDNN SKNNINSVVS YWEQHGHQQH MSRNVVMGEW DLEELMKDVS CLPFLDFQVE
101: AILGNRWSQI AARLPGRTDN EIKNFWNSTI KKRLKMNSAA SSPATTECAS PPEPKLDGGS ASCLDLTSLE DGSHHGMKSM WRIDSSSSPS SSSSIQQQSR
201: PSTMAPAANR GYGGLLLPLP NQFCGVAPST DTSVPPFFHD HSSFKQVSPL RTGGYYPHGM AMERGGGSCF TGEEAVGGGG EHSVLFNVPP LLEPMAVTLQ
301: DQTLMAATGN SDDNHRNINS TAEGTTLSSK NGCNINDDNN SKNNINSVVS YWEQHGHQQH MSRNVVMGEW DLEELMKDVS CLPFLDFQVE
001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD
Arabidopsis Description
MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.