Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G387300.1 | Wheat | nucleus | 94.16 | 94.16 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 93.07 | 92.39 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 93.07 | 92.06 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 86.5 | 84.95 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 84.31 | 81.63 |
| Os04t0532800-01 | Rice | nucleus | 70.07 | 70.33 |
| EES11177 | Sorghum | nucleus | 72.99 | 67.11 |
| Solyc01g009650.1.1 | Tomato | nucleus | 21.9 | 65.93 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 70.44 | 63.49 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 62.41 | 57.97 |
| Bra013900.1-P | Field mustard | nucleus | 33.58 | 42.79 |
| CDY32589 | Canola | nucleus | 35.77 | 39.04 |
| KRH35334 | Soybean | nucleus | 37.96 | 38.52 |
| PGSC0003DMT400037080 | Potato | nucleus | 39.05 | 38.49 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 43.07 | 38.31 |
| CDY64708 | Canola | nucleus | 35.77 | 37.98 |
| Bra018027.1-P | Field mustard | nucleus | 35.4 | 37.6 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 40.51 | 37.25 |
| CDY05881 | Canola | nucleus | 35.04 | 37.21 |
| CDY38910 | Canola | nucleus | 36.13 | 37.08 |
| Bra029129.1-P | Field mustard | nucleus | 36.13 | 37.08 |
| AT5G52260.1 | Thale cress | nucleus | 36.13 | 36.94 |
| TraesCS2B01G178000.1 | Wheat | nucleus | 26.28 | 36.92 |
| CDX94440 | Canola | nucleus | 34.31 | 36.58 |
| KRH09018 | Soybean | nucleus | 38.69 | 36.43 |
| CDY50197 | Canola | nucleus | 33.21 | 36.4 |
| Solyc03g025870.2.1 | Tomato | nucleus | 36.86 | 36.2 |
| KRH38485 | Soybean | nucleus | 37.96 | 35.74 |
| AT4G25560.1 | Thale cress | nucleus | 36.86 | 35.69 |
| AT3G48920.1 | Thale cress | nucleus | 33.94 | 35.63 |
| CDX89413 | Canola | nucleus | 35.04 | 35.56 |
| CDX92718 | Canola | nucleus | 32.85 | 34.35 |
| KRG91494 | Soybean | nucleus | 38.32 | 31.53 |
| TraesCS3B01G286500.1 | Wheat | nucleus | 32.12 | 31.32 |
| TraesCS7B01G244200.1 | Wheat | nucleus | 32.85 | 31.03 |
| TraesCS1B01G383700.1 | Wheat | nucleus | 32.12 | 30.03 |
| TraesCS1B01G383800.1 | Wheat | nucleus | 31.02 | 29.51 |
| TraesCS1B01G383900.1 | Wheat | nucleus | 31.02 | 29.41 |
| TraesCS4B01G312100.1 | Wheat | nucleus | 27.74 | 29.12 |
| TraesCS1B01G383600.1 | Wheat | nucleus | 31.39 | 28.2 |
| TraesCS3B01G224500.1 | Wheat | nucleus | 30.66 | 27.1 |
| TraesCS3B01G280700.1 | Wheat | nucleus | 27.74 | 26.57 |
| TraesCS3B01G109800.1 | Wheat | nucleus | 26.64 | 25.7 |
| TraesCS2B01G177900.1 | Wheat | nucleus | 32.48 | 24.65 |
| TraesCS7B01G204800.1 | Wheat | nucleus | 31.02 | 24.64 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 36.86 | 23.43 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 31.39 | 22.51 |
| Bra019154.1-P | Field mustard | nucleus | 35.4 | 21.04 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 28.83 | 20.26 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G387700.1 | EnsemblPlantsGene:TraesCS2B01G387700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:550856823..550859182
Molecular Weight (calculated)
29741.8 Da
IEP (calculated)
7.752
GRAVY (calculated)
-0.612
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKSCQKPK AQHRKGLWSP EEDQKLRDYI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN YLRPGLKHGM FSQAEEETVM SLHATLGNKW SRIAQHLPGR
101: TDNEVKNYWN SYLKKRVEGA RAPAKSAGSD APRSPTPSDS GRERSTVNQL SNSGSSGPPE SSSTADDSSS LTGPGAAALI RPHAPVLPKV MFADWLDMDM
201: EYGTSLLRPS ALDTAFDCSQ AQQGASNTVD GRCGTVDSLH GLSDGGICWE FEADTQGGAG FCDLLSMSEF LGIN
101: TDNEVKNYWN SYLKKRVEGA RAPAKSAGSD APRSPTPSDS GRERSTVNQL SNSGSSGPPE SSSTADDSSS LTGPGAAALI RPHAPVLPKV MFADWLDMDM
201: EYGTSLLRPS ALDTAFDCSQ AQQGASNTVD GRCGTVDSLH GLSDGGICWE FEADTQGGAG FCDLLSMSEF LGIN
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EKEESNSVSL RNSLSSMIPT QFNIDDGSVS NAGFDTQVCV KPSIILLPPP NNTSSTVSGQ DHVNVSEPNW
201: ESNSGTTSHL NNPGMEEMKW SEEYLNESLF STQVYVKSET DFNSNIAFPW SQSQACDVFP KDLQRMAFSF GGQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EKEESNSVSL RNSLSSMIPT QFNIDDGSVS NAGFDTQVCV KPSIILLPPP NNTSSTVSGQ DHVNVSEPNW
201: ESNSGTTSHL NNPGMEEMKW SEEYLNESLF STQVYVKSET DFNSNIAFPW SQSQACDVFP KDLQRMAFSF GGQTL
Arabidopsis Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.