Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G367000.1 | Wheat | nucleus | 92.11 | 91.46 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 90.68 | 91.34 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 86.02 | 87.59 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 87.81 | 86.57 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 84.95 | 86.5 |
| Os04t0532800-01 | Rice | nucleus | 71.33 | 72.89 |
| EES11177 | Sorghum | nucleus | 73.48 | 68.79 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 73.12 | 67.11 |
| Solyc01g009650.1.1 | Tomato | nucleus | 21.15 | 64.84 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 61.65 | 58.31 |
| Bra013900.1-P | Field mustard | nucleus | 33.69 | 43.72 |
| KRH35334 | Soybean | nucleus | 39.78 | 41.11 |
| CDY64708 | Canola | nucleus | 36.56 | 39.53 |
| KRH09018 | Soybean | nucleus | 41.22 | 39.52 |
| Bra018027.1-P | Field mustard | nucleus | 36.2 | 39.15 |
| CDY32589 | Canola | nucleus | 35.13 | 39.04 |
| CDY50197 | Canola | nucleus | 34.77 | 38.8 |
| PGSC0003DMT400037080 | Potato | nucleus | 38.35 | 38.49 |
| KRH38485 | Soybean | nucleus | 40.14 | 38.49 |
| AT5G52260.1 | Thale cress | nucleus | 36.92 | 38.43 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 42.29 | 38.31 |
| AT4G25560.1 | Thale cress | nucleus | 38.71 | 38.16 |
| CDX94440 | Canola | nucleus | 35.13 | 38.13 |
| CDY05881 | Canola | nucleus | 35.13 | 37.98 |
| AT3G48920.1 | Thale cress | nucleus | 35.48 | 37.93 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 40.5 | 37.92 |
| TraesCS2B01G178000.1 | Wheat | nucleus | 26.16 | 37.44 |
| CDX89413 | Canola | nucleus | 36.2 | 37.41 |
| Bra029129.1-P | Field mustard | nucleus | 35.48 | 37.08 |
| CDY38910 | Canola | nucleus | 35.48 | 37.08 |
| CDX92718 | Canola | nucleus | 34.77 | 37.02 |
| Solyc03g025870.2.1 | Tomato | nucleus | 36.2 | 36.2 |
| KRG91494 | Soybean | nucleus | 38.71 | 32.43 |
| TraesCS3B01G286500.1 | Wheat | nucleus | 32.26 | 32.03 |
| TraesCS7B01G244200.1 | Wheat | nucleus | 32.26 | 31.03 |
| TraesCS1B01G383800.1 | Wheat | nucleus | 31.18 | 30.21 |
| TraesCS4B01G312100.1 | Wheat | nucleus | 27.96 | 29.89 |
| TraesCS1B01G383700.1 | Wheat | nucleus | 31.18 | 29.69 |
| TraesCS1B01G383900.1 | Wheat | nucleus | 30.47 | 29.41 |
| TraesCS1B01G383600.1 | Wheat | nucleus | 30.82 | 28.2 |
| TraesCS3B01G224500.1 | Wheat | nucleus | 30.11 | 27.1 |
| TraesCS3B01G280700.1 | Wheat | nucleus | 27.24 | 26.57 |
| TraesCS3B01G109800.1 | Wheat | nucleus | 26.52 | 26.06 |
| TraesCS2B01G177900.1 | Wheat | nucleus | 32.97 | 25.48 |
| TraesCS7B01G204800.1 | Wheat | nucleus | 30.11 | 24.35 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 36.2 | 23.43 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 30.82 | 22.51 |
| Bra019154.1-P | Field mustard | nucleus | 35.13 | 21.26 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 29.03 | 20.77 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G387800.1 | EnsemblPlantsGene:TraesCS2B01G387800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:550995883..550997898
Molecular Weight (calculated)
30323.6 Da
IEP (calculated)
7.251
GRAVY (calculated)
-0.606
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN YLRPGLKHGM FSREEEETVM SLHATLGNKW SQIAQHLPGR
101: TDNEVKNYWN SYLKKRVQGA RSPAKSAGSD APRSPTPSES GREDSTVNRP SNSGSSGPLE SSSTADESSS LTVPGATASI RPHAPVLPKV MFADWLDMDM
201: DYGTGLMAPS ALDAAFDGSP AQQGVSHQGP LQVEGLCDAV DSLHGLSNGG WDFDVDKMHM QGGAGFCDLL SMSEFLGIN
101: TDNEVKNYWN SYLKKRVQGA RSPAKSAGSD APRSPTPSES GREDSTVNRP SNSGSSGPLE SSSTADESSS LTVPGATASI RPHAPVLPKV MFADWLDMDM
201: DYGTGLMAPS ALDAAFDGSP AQQGVSHQGP LQVEGLCDAV DSLHGLSNGG WDFDVDKMHM QGGAGFCDLL SMSEFLGIN
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.