Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G387700.1 | Wheat | nucleus | 94.16 | 94.16 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 94.53 | 93.84 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 94.53 | 93.5 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 87.59 | 86.02 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 86.13 | 83.39 |
| Os04t0532800-01 | Rice | nucleus | 70.8 | 71.06 |
| EES11177 | Sorghum | nucleus | 72.99 | 67.11 |
| Solyc01g009650.1.1 | Tomato | nucleus | 21.9 | 65.93 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 72.63 | 65.46 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 64.23 | 59.66 |
| Bra013900.1-P | Field mustard | nucleus | 33.58 | 42.79 |
| PGSC0003DMT400037080 | Potato | nucleus | 40.15 | 39.57 |
| KRH35334 | Soybean | nucleus | 38.69 | 39.26 |
| CDY32589 | Canola | nucleus | 35.4 | 38.65 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 43.43 | 38.64 |
| CDY64708 | Canola | nucleus | 36.13 | 38.37 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 41.61 | 38.26 |
| Bra018027.1-P | Field mustard | nucleus | 35.77 | 37.98 |
| KRH09018 | Soybean | nucleus | 40.15 | 37.8 |
| CDY05881 | Canola | nucleus | 35.4 | 37.6 |
| TraesCS2B01G178000.1 | Wheat | nucleus | 26.64 | 37.44 |
| Solyc03g025870.2.1 | Tomato | nucleus | 37.96 | 37.28 |
| CDX94440 | Canola | nucleus | 34.67 | 36.97 |
| AT5G52260.1 | Thale cress | nucleus | 36.13 | 36.94 |
| CDY50197 | Canola | nucleus | 33.58 | 36.8 |
| KRH38485 | Soybean | nucleus | 39.05 | 36.77 |
| AT4G25560.1 | Thale cress | nucleus | 37.96 | 36.75 |
| Bra029129.1-P | Field mustard | nucleus | 35.77 | 36.7 |
| CDY38910 | Canola | nucleus | 35.77 | 36.7 |
| AT3G48920.1 | Thale cress | nucleus | 34.67 | 36.4 |
| CDX89413 | Canola | nucleus | 35.4 | 35.93 |
| CDX92718 | Canola | nucleus | 33.21 | 34.73 |
| TraesCS3B01G286500.1 | Wheat | nucleus | 33.21 | 32.38 |
| KRG91494 | Soybean | nucleus | 38.69 | 31.83 |
| TraesCS7B01G244200.1 | Wheat | nucleus | 33.21 | 31.38 |
| TraesCS1B01G383700.1 | Wheat | nucleus | 33.21 | 31.06 |
| TraesCS1B01G383800.1 | Wheat | nucleus | 31.75 | 30.21 |
| TraesCS1B01G383900.1 | Wheat | nucleus | 31.39 | 29.76 |
| TraesCS4B01G312100.1 | Wheat | nucleus | 28.1 | 29.5 |
| TraesCS1B01G383600.1 | Wheat | nucleus | 32.48 | 29.18 |
| TraesCS3B01G224500.1 | Wheat | nucleus | 31.75 | 28.06 |
| TraesCS3B01G280700.1 | Wheat | nucleus | 27.74 | 26.57 |
| TraesCS3B01G109800.1 | Wheat | nucleus | 27.37 | 26.41 |
| TraesCS2B01G177900.1 | Wheat | nucleus | 33.58 | 25.48 |
| TraesCS7B01G204800.1 | Wheat | nucleus | 30.66 | 24.35 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 37.23 | 23.67 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 31.39 | 22.51 |
| Bra019154.1-P | Field mustard | nucleus | 35.4 | 21.04 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 29.56 | 20.77 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G387300.1 | EnsemblPlantsGene:TraesCS2B01G387300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:550510296..550512562
Molecular Weight (calculated)
29536.5 Da
IEP (calculated)
7.125
GRAVY (calculated)
-0.642
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKSCQKPK AQHRKGLWSP EEDQKLRDYI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN YLRPGLKHGM FSQAEEETAM SLHATLGNKW SQIAQHLPGR
101: TDNEVKNYWN SYLKKRVEGA RAPAKSAGSD APRSPTPSDS GRERRTVNQP SNSGSSGPPE SSSTGDDSSS LTGPGAAALI RPHAPVLPKV MFADWLDMDM
201: DYGTGLMAPS ALDAAFDCSP VQQGGSNTVD GRCGAEDSLH GLGDGGICWE FEADTQGGAG FCDLLSMSEF LGIN
101: TDNEVKNYWN SYLKKRVEGA RAPAKSAGSD APRSPTPSDS GRERRTVNQP SNSGSSGPPE SSSTGDDSSS LTGPGAAALI RPHAPVLPKV MFADWLDMDM
201: DYGTGLMAPS ALDAAFDCSP VQQGGSNTVD GRCGAEDSLH GLGDGGICWE FEADTQGGAG FCDLLSMSEF LGIN
001: MVFKSEKSNR EMKSKEKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPLQA GLQRNGKSCR LRWVNYLRPG LKKSLFTKQE ETILLSLHSM LGNKWSQISK
101: FLPGRTDNEI KNYWHSNLKK GVTLKQHETT KKHQTPLITN SLEALQSSTE RSSSSINVGE TSNAQTSSFS PNLVFSEWLD HSLLMDQSPQ KSSYVQNLVL
201: PEERGFIGPC GPRYLGNDSL PDFVPNSEFL LDDEISSEIE FCTSFSDNFL FDGLINELRP M
101: FLPGRTDNEI KNYWHSNLKK GVTLKQHETT KKHQTPLITN SLEALQSSTE RSSSSINVGE TSNAQTSSFS PNLVFSEWLD HSLLMDQSPQ KSSYVQNLVL
201: PEERGFIGPC GPRYLGNDSL PDFVPNSEFL LDDEISSEIE FCTSFSDNFL FDGLINELRP M
Arabidopsis Description
AtMYB45MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SMT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.