Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64708 | Canola | nucleus | 80.62 | 80.62 |
| Bra018027.1-P | Field mustard | nucleus | 80.23 | 80.23 |
| AT3G48920.1 | Thale cress | nucleus | 67.44 | 66.67 |
| Solyc01g009650.1.1 | Tomato | nucleus | 20.54 | 58.24 |
| CDY05516 | Canola | nucleus | 26.74 | 52.27 |
| CDY05331 | Canola | nucleus | 26.74 | 52.27 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 26.74 | 48.59 |
| CDY50197 | Canola | nucleus | 38.37 | 39.6 |
| CDY32589 | Canola | nucleus | 37.21 | 38.25 |
| CDX92718 | Canola | nucleus | 38.76 | 38.17 |
| KRH35334 | Soybean | nucleus | 38.37 | 36.67 |
| CDY38910 | Canola | nucleus | 37.6 | 36.33 |
| CDX89413 | Canola | nucleus | 37.21 | 35.56 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 37.98 | 35.51 |
| CDX94440 | Canola | nucleus | 35.27 | 35.41 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 37.6 | 35.4 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 37.98 | 35.38 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 37.98 | 35.38 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 38.76 | 35.34 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 37.98 | 35.13 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 37.21 | 35.04 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 38.37 | 34.98 |
| PGSC0003DMT400037080 | Potato | nucleus | 37.6 | 34.89 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 37.98 | 34.63 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 37.6 | 34.52 |
| Os04t0532800-01 | Rice | nucleus | 36.43 | 34.43 |
| Solyc03g025870.2.1 | Tomato | nucleus | 37.21 | 34.41 |
| KRH09018 | Soybean | nucleus | 38.37 | 34.02 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 39.15 | 33.89 |
| KRH38485 | Soybean | nucleus | 37.98 | 33.68 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 35.66 | 32.97 |
| Zm00001d051267_P001 | Maize | nucleus | 35.27 | 32.73 |
| Zm00001d017383_P001 | Maize | nucleus | 36.82 | 32.65 |
| EES11177 | Sorghum | nucleus | 37.6 | 32.55 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 36.05 | 32.4 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 36.43 | 31.86 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 29.84 | 31.3 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 35.66 | 31.19 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 26.74 | 30.94 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 33.33 | 30.94 |
| EES06150 | Sorghum | nucleus | 34.88 | 30.1 |
| KRG91494 | Soybean | nucleus | 38.76 | 30.03 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 35.66 | 29.87 |
| Zm00001d014989_P001 | Maize | nucleus | 35.66 | 29.87 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 35.66 | 29.87 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 34.88 | 29.61 |
| EES07547 | Sorghum | nucleus | 34.88 | 29.51 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 29.84 | 28.21 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 32.95 | 27.6 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 33.72 | 27.53 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 33.33 | 27.48 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 30.23 | 26.9 |
| CDY43404 | Canola | nucleus | 30.23 | 26.53 |
| CDX93504 | Canola | nucleus | 29.84 | 26.19 |
| CDY50901 | Canola | nucleus | 29.84 | 25.75 |
| CDX78493 | Canola | nucleus | 27.91 | 25.71 |
| CDX85684 | Canola | nucleus | 27.52 | 25.45 |
| CDX91158 | Canola | nucleus | 27.13 | 25.18 |
| CDY42172 | Canola | nucleus | 28.68 | 25.17 |
| CDY42171 | Canola | nucleus | 28.68 | 25.17 |
| CDY08409 | Canola | nucleus | 28.68 | 25.17 |
| CDY53970 | Canola | nucleus | 27.13 | 25.0 |
| CDY22635 | Canola | nucleus | 29.84 | 24.92 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 33.72 | 24.51 |
| CDY06359 | Canola | nucleus | 29.07 | 24.35 |
| CDY07124 | Canola | nucleus | 31.01 | 23.81 |
| CDY58217 | Canola | nucleus | 30.62 | 23.51 |
| CDY32188 | Canola | nucleus | 30.23 | 23.21 |
| CDY68301 | Canola | nucleus | 29.46 | 22.69 |
| CDX87038 | Canola | nucleus | 29.46 | 22.49 |
| CDY31082 | Canola | nucleus | 29.84 | 22.25 |
| CDY27999 | Canola | nucleus | 28.29 | 21.79 |
| CDY35982 | Canola | nucleus | 27.91 | 21.49 |
| CDX88230 | Canola | nucleus | 29.46 | 21.35 |
| CDX80576 | Canola | nucleus | 29.46 | 21.29 |
| CDY39077 | Canola | nucleus | 29.07 | 21.01 |
| CDY55231 | Canola | nucleus | 26.36 | 20.73 |
| CDY37496 | Canola | nucleus | 28.68 | 20.73 |
| CDY70536 | Canola | nucleus | 27.52 | 20.7 |
| CDX74013 | Canola | nucleus | 27.13 | 20.59 |
| CDX97526 | Canola | nucleus | 26.36 | 20.06 |
| CDX97209 | Canola | nucleus | 27.52 | 20.06 |
| CDY08343 | Canola | nucleus | 27.52 | 19.24 |
| CDY38211 | Canola | nucleus | 27.52 | 19.24 |
| CDY25547 | Canola | nucleus | 27.13 | 18.92 |
| CDY34386 | Canola | extracellular | 12.02 | 10.33 |
| CDY70602 | Canola | nucleus, plastid | 4.26 | 7.05 |
| CDY70493 | Canola | cytosol, plastid | 2.33 | 4.55 |
| CDY05517 | Canola | plastid | 1.94 | 2.92 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078EXH5 | EnsemblPlants:CDY05881 | ProteinID:CDY05881 | ProteinID:CDY05881.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00121681001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF563 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF094C | SEG:seg | : |
Description
BnaC08g20580D
Coordinates
chrLK031966:+:280681..281999
Molecular Weight (calculated)
29368.2 Da
IEP (calculated)
7.535
GRAVY (calculated)
-0.635
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MVCKSETSNR KLNKVRQSKG LWSPEEDEKL RSHVLKYGHV CWSTIPIQAG LQRNGKSCRL RWVNYLRPGL KKSAFTKEEE TTLLSLHSIL GNKWAHISKY
101: LPGRTDNEIK NYWHSYLKKS VVPSRKDETT RTPQTHSVAN SLEAFESTSE RSSSCSNFGD SFRAKVSNFS PSLVFSEWLD DSLVMDQSPQ KYSYVQDHIV
201: PQQSGFVETF SQGFYENNNS LDNFIPNSGF SLEGDIEFCT SFSDSFLVDA LVSEQGSM
101: LPGRTDNEIK NYWHSYLKKS VVPSRKDETT RTPQTHSVAN SLEAFESTSE RSSSCSNFGD SFRAKVSNFS PSLVFSEWLD DSLVMDQSPQ KYSYVQDHIV
201: PQQSGFVETF SQGFYENNNS LDNFIPNSGF SLEGDIEFCT SFSDSFLVDA LVSEQGSM
001: MVFKSEKSNR EMKSKEKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPLQA GLQRNGKSCR LRWVNYLRPG LKKSLFTKQE ETILLSLHSM LGNKWSQISK
101: FLPGRTDNEI KNYWHSNLKK GVTLKQHETT KKHQTPLITN SLEALQSSTE RSSSSINVGE TSNAQTSSFS PNLVFSEWLD HSLLMDQSPQ KSSYVQNLVL
201: PEERGFIGPC GPRYLGNDSL PDFVPNSEFL LDDEISSEIE FCTSFSDNFL FDGLINELRP M
101: FLPGRTDNEI KNYWHSNLKK GVTLKQHETT KKHQTPLITN SLEALQSSTE RSSSSINVGE TSNAQTSSFS PNLVFSEWLD HSLLMDQSPQ KSSYVQNLVL
201: PEERGFIGPC GPRYLGNDSL PDFVPNSEFL LDDEISSEIE FCTSFSDNFL FDGLINELRP M
Arabidopsis Description
AtMYB45MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SMT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.