Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018207_P001 | |
| Zm00001d052138_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | Zm00001d018207_P001 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | Zm00001d052138_P004 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06150 | Sorghum | nucleus | 86.69 | 89.3 |
| Zm00001d008206_P001 | Maize | nucleus | 17.21 | 72.6 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 69.81 | 69.81 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 69.16 | 68.05 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 69.81 | 68.04 |
| Solyc01g009650.1.1 | Tomato | nucleus | 19.16 | 64.84 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 71.1 | 61.69 |
| Zm00001d023931_P001 | Maize | nucleus | 17.21 | 54.64 |
| Bra013900.1-P | Field mustard | nucleus | 30.52 | 43.72 |
| Zm00001d017383_P001 | Maize | nucleus | 39.94 | 42.27 |
| Zm00001d051267_P001 | Maize | nucleus | 37.01 | 41.01 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 35.39 | 39.93 |
| PGSC0003DMT400037080 | Potato | nucleus | 34.74 | 38.49 |
| KRH35334 | Soybean | nucleus | 32.47 | 37.04 |
| Solyc03g025870.2.1 | Tomato | nucleus | 33.12 | 36.56 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 34.74 | 35.91 |
| CDY32589 | Canola | nucleus | 29.22 | 35.86 |
| CDY05881 | Canola | nucleus | 29.87 | 35.66 |
| KRH38485 | Soybean | nucleus | 33.12 | 35.05 |
| CDX89413 | Canola | nucleus | 30.52 | 34.81 |
| KRH09018 | Soybean | nucleus | 32.79 | 34.71 |
| CDX94440 | Canola | nucleus | 28.9 | 34.63 |
| CDY38910 | Canola | nucleus | 29.87 | 34.46 |
| Bra029129.1-P | Field mustard | nucleus | 29.87 | 34.46 |
| CDY50197 | Canola | nucleus | 27.92 | 34.4 |
| CDY64708 | Canola | nucleus | 28.57 | 34.11 |
| Bra018027.1-P | Field mustard | nucleus | 28.57 | 34.11 |
| AT3G48920.1 | Thale cress | nucleus | 28.9 | 34.1 |
| AT5G52260.1 | Thale cress | nucleus | 29.22 | 33.58 |
| AT4G25560.1 | Thale cress | nucleus | 30.19 | 32.86 |
| Zm00001d009435_P001 | Maize | nucleus | 26.95 | 32.81 |
| CDX92718 | Canola | nucleus | 27.6 | 32.44 |
| Zm00001d038878_P001 | Maize | nucleus | 30.19 | 28.88 |
| KRG91494 | Soybean | nucleus | 31.17 | 28.83 |
| Zm00001d024784_P001 | Maize | nucleus | 22.4 | 26.95 |
| Zm00001d043729_P001 | Maize | nucleus | 19.81 | 26.64 |
| Zm00001d040527_P001 | Maize | nucleus | 24.03 | 26.33 |
| Zm00001d008695_P001 | Maize | nucleus | 23.05 | 25.63 |
| Zm00001d005055_P001 | Maize | nucleus | 18.83 | 25.55 |
| Zm00001d039700_P001 | Maize | nucleus | 19.81 | 25.52 |
| Zm00001d011669_P001 | Maize | nucleus | 19.48 | 25.0 |
| Zm00001d022259_P002 | Maize | nucleus | 27.6 | 24.36 |
| Zm00001d024630_P002 | Maize | nucleus | 27.92 | 23.76 |
| Zm00001d010907_P001 | Maize | nucleus | 31.17 | 22.54 |
| Zm00001d021537_P001 | Maize | nucleus | 21.43 | 21.78 |
| Bra019154.1-P | Field mustard | nucleus | 28.57 | 19.09 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:541753 | UniProt:A0A1D6GYL1 | ProteinID:AQK67843.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF925 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0001B36C14 | EnsemblPlantsGene:Zm00001d014989 | EnsemblPlants:Zm00001d014989_P001 | EnsemblPlants:Zm00001d014989_T001 | SEG:seg |
Description
MYB-transcription factor 161R2R3MYB-domain protein
Coordinates
chr5:-:71262940..71264436
Molecular Weight (calculated)
33539.2 Da
IEP (calculated)
8.338
GRAVY (calculated)
-0.691
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN YLRPGLKRGM FSQEEEDVVI DLQAKLGNKW SQIAMHLPGR
101: TDNEVKNYWN SYLKKRVMQQ AQGASSNSSP KSPPELTSMS TTADLSSMSM PMPMSMPMHQ RHHVKNNSGG GSTTTSHDQQ DDANISGSRA ALSAPPPPPL
201: AQQPFEHQAA RSFVFSDWAP ESYSLSTHWP AATSTSGNVT PSHGSAAAFG DQMSGTYGAG GLPPPHQDHH HSAAPATTGI AGSGYFDLLN MGDIYGGFSS
301: TNNDDLLF
101: TDNEVKNYWN SYLKKRVMQQ AQGASSNSSP KSPPELTSMS TTADLSSMSM PMPMSMPMHQ RHHVKNNSGG GSTTTSHDQQ DDANISGSRA ALSAPPPPPL
201: AQQPFEHQAA RSFVFSDWAP ESYSLSTHWP AATSTSGNVT PSHGSAAAFG DQMSGTYGAG GLPPPHQDHH HSAAPATTGI AGSGYFDLLN MGDIYGGFSS
301: TNNDDLLF
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.