Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G053100.1 | Wheat | nucleus | 91.77 | 94.16 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 91.14 | 92.01 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 93.99 | 83.66 |
| EES06150 | Sorghum | nucleus | 70.25 | 74.25 |
| Zm00001d014989_P001 | Maize | nucleus | 68.04 | 69.81 |
| Solyc01g009650.1.1 | Tomato | nucleus | 18.67 | 64.84 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 42.09 | 45.08 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 37.97 | 43.48 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 37.97 | 42.7 |
| Bra013900.1-P | Field mustard | nucleus | 28.48 | 41.86 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 37.34 | 41.7 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 35.44 | 41.03 |
| KRH35334 | Soybean | nucleus | 33.54 | 39.26 |
| PGSC0003DMT400037080 | Potato | nucleus | 34.18 | 38.85 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 35.13 | 37.25 |
| Solyc03g025870.2.1 | Tomato | nucleus | 32.59 | 36.92 |
| KRH09018 | Soybean | nucleus | 33.23 | 36.08 |
| KRH38485 | Soybean | nucleus | 33.23 | 36.08 |
| CDY38910 | Canola | nucleus | 29.75 | 35.21 |
| Bra029129.1-P | Field mustard | nucleus | 29.75 | 35.21 |
| CDY32589 | Canola | nucleus | 27.85 | 35.06 |
| CDY50197 | Canola | nucleus | 27.53 | 34.8 |
| CDY64708 | Canola | nucleus | 27.85 | 34.11 |
| CDX89413 | Canola | nucleus | 29.11 | 34.07 |
| AT5G52260.1 | Thale cress | nucleus | 28.8 | 33.96 |
| CDY05881 | Canola | nucleus | 27.53 | 33.72 |
| Bra018027.1-P | Field mustard | nucleus | 27.53 | 33.72 |
| AT3G48920.1 | Thale cress | nucleus | 27.85 | 33.72 |
| CDX94440 | Canola | nucleus | 27.22 | 33.46 |
| TraesCS4D01G309700.1 | Wheat | nucleus | 23.1 | 33.18 |
| CDX92718 | Canola | nucleus | 26.58 | 32.06 |
| AT4G25560.1 | Thale cress | nucleus | 28.48 | 31.8 |
| TraesCS3D01G255400.1 | Wheat | nucleus | 28.16 | 31.23 |
| KRG91494 | Soybean | nucleus | 32.59 | 30.93 |
| TraesCS1D01G371700.1 | Wheat | nucleus | 27.85 | 30.03 |
| TraesCS1D01G371800.1 | Wheat | nucleus | 27.53 | 30.0 |
| TraesCS1D01G371900.1 | Wheat | nucleus | 26.27 | 29.54 |
| TraesCS7D01G340300.1 | Wheat | nucleus | 26.58 | 29.27 |
| TraesCS1D01G371500.1 | Wheat | nucleus | 27.53 | 29.19 |
| TraesCS3D01G251600.1 | Wheat | nucleus | 26.9 | 29.01 |
| TraesCS1D01G371400.1 | Wheat | nucleus | 25.95 | 27.06 |
| TraesCS3D01G094500.1 | Wheat | nucleus | 24.37 | 27.02 |
| TraesCS2D01G158300.1 | Wheat | nucleus | 23.1 | 25.61 |
| TraesCS2D01G158200.1 | Wheat | nucleus | 28.16 | 25.5 |
| TraesCS7D01G300000.1 | Wheat | nucleus | 26.58 | 24.49 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 28.48 | 23.56 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 30.06 | 22.14 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 25.95 | 21.08 |
| Bra019154.1-P | Field mustard | nucleus | 28.48 | 19.52 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G043600.1 | EnsemblPlantsGene:TraesCS6D01G043600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF925 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:18016865..18018535
Molecular Weight (calculated)
34089.6 Da
IEP (calculated)
7.610
GRAVY (calculated)
-0.630
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN YLRPGLKRGM FSQEEEDVVI NLQAKLGNKW SQIAMHLPGR
101: TDNEVKNYWN SYLKKRVMQL GSNSSSNPAS KNASPELLTS MSATTELIMT SGGGGGGGGS TATSTHDHDA NISSSGAISA AEPFVDQHEH QHHHQQQAKN
201: YVFADWMPTA AATAAPGPES YSMSAHWPAS TASSGNVTPS HGAFVGDQMS GSSYAALQHP HQQEHHHHHH HQHGSTAAVG AHAGAGGMVA GGGYFDLLNM
301: GDIYGGFTTT NDDLLF
101: TDNEVKNYWN SYLKKRVMQL GSNSSSNPAS KNASPELLTS MSATTELIMT SGGGGGGGGS TATSTHDHDA NISSSGAISA AEPFVDQHEH QHHHQQQAKN
201: YVFADWMPTA AATAAPGPES YSMSAHWPAS TASSGNVTPS HGAFVGDQMS GSSYAALQHP HQQEHHHHHH HQHGSTAAVG AHAGAGGMVA GGGYFDLLNM
301: GDIYGGFTTT NDDLLF
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
Arabidopsis Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.