Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | KRH14801 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | KRH73341 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH09018 | Soybean | nucleus | 92.44 | 92.44 |
| Solyc01g009650.1.1 | Tomato | nucleus | 20.96 | 67.03 |
| KRH35334 | Soybean | nucleus | 61.86 | 66.67 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 30.24 | 61.97 |
| KRG91494 | Soybean | nucleus | 62.89 | 54.95 |
| PGSC0003DMT400037080 | Potato | nucleus | 46.05 | 48.2 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 49.14 | 47.99 |
| Solyc03g025870.2.1 | Tomato | nucleus | 44.33 | 46.24 |
| Bra013900.1-P | Field mustard | nucleus | 32.3 | 43.72 |
| CDY50197 | Canola | nucleus | 36.08 | 42.0 |
| CDX94440 | Canola | nucleus | 36.77 | 41.63 |
| CDX92718 | Canola | nucleus | 36.77 | 40.84 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 40.21 | 40.77 |
| CDY32589 | Canola | nucleus | 35.05 | 40.64 |
| AT3G48920.1 | Thale cress | nucleus | 36.08 | 40.23 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 38.49 | 40.14 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 38.49 | 40.14 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 38.83 | 39.93 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 38.83 | 39.93 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 38.49 | 39.86 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 40.21 | 39.66 |
| AT4G25560.1 | Thale cress | nucleus | 38.49 | 39.58 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 37.46 | 39.49 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 37.46 | 39.35 |
| CDY38910 | Canola | nucleus | 36.08 | 39.33 |
| Bra029129.1-P | Field mustard | nucleus | 36.08 | 39.33 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 39.86 | 39.32 |
| CDX89413 | Canola | nucleus | 36.43 | 39.26 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 38.14 | 39.22 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 36.77 | 39.05 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 32.99 | 39.02 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 37.11 | 38.85 |
| Os04t0532800-01 | Rice | nucleus | 36.43 | 38.83 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 36.77 | 38.63 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 36.08 | 38.46 |
| AT5G52260.1 | Thale cress | nucleus | 35.4 | 38.43 |
| Zm00001d051267_P001 | Maize | nucleus | 36.43 | 38.13 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 40.21 | 37.99 |
| CDY05881 | Canola | nucleus | 33.68 | 37.98 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 35.74 | 37.96 |
| Bra018027.1-P | Field mustard | nucleus | 33.33 | 37.6 |
| CDY64708 | Canola | nucleus | 33.33 | 37.6 |
| Zm00001d017383_P001 | Maize | nucleus | 37.46 | 37.46 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 28.52 | 37.22 |
| EES11177 | Sorghum | nucleus | 37.46 | 36.58 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 36.08 | 36.21 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 36.77 | 35.2 |
| EES07547 | Sorghum | nucleus | 36.77 | 35.08 |
| EES06150 | Sorghum | nucleus | 35.74 | 34.78 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 36.77 | 34.74 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 35.4 | 33.44 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 36.08 | 33.23 |
| Zm00001d014989_P001 | Maize | nucleus | 35.05 | 33.12 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 35.4 | 32.91 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 35.74 | 29.3 |
| KRH43663 | Soybean | nucleus | 30.58 | 27.22 |
| KRH13791 | Soybean | nucleus | 30.24 | 27.08 |
| KRH47101 | Soybean | nucleus | 31.96 | 26.42 |
| KRH20828 | Soybean | nucleus | 28.18 | 26.37 |
| KRH27485 | Soybean | nucleus | 28.18 | 26.03 |
| KRH44125 | Soybean | nucleus | 30.93 | 25.79 |
| KRG93751 | Soybean | nucleus | 29.55 | 25.6 |
| KRH10036 | Soybean | nucleus | 30.93 | 25.5 |
| KRH23131 | Soybean | nucleus | 28.87 | 25.38 |
| KRH10204 | Soybean | nucleus | 28.87 | 25.15 |
| KRH24713 | Soybean | nucleus | 28.87 | 25.0 |
| KRH29717 | Soybean | nucleus | 29.21 | 25.0 |
| KRH18309 | Soybean | nucleus | 29.21 | 24.93 |
| KRH41236 | Soybean | nucleus | 27.49 | 24.92 |
| KRH63612 | Soybean | nucleus | 30.58 | 24.79 |
| KRH54334 | Soybean | nucleus | 30.93 | 24.73 |
| KRH27893 | Soybean | nucleus | 27.49 | 24.62 |
| KRH77586 | Soybean | nucleus | 27.49 | 24.54 |
| KRH59965 | Soybean | nucleus | 26.8 | 24.38 |
| KRH57123 | Soybean | nucleus | 30.24 | 23.78 |
| Bra019154.1-P | Field mustard | nucleus | 36.43 | 22.99 |
| KRH68350 | Soybean | nucleus | 32.99 | 22.97 |
| KRH03235 | Soybean | nucleus | 28.52 | 22.93 |
| KRH68389 | Soybean | nucleus | 31.96 | 22.25 |
| KRG90431 | Soybean | nucleus | 32.65 | 22.2 |
| KRH33726 | Soybean | nucleus | 32.65 | 22.14 |
| KRH69136 | Soybean | nucleus | 32.65 | 21.89 |
| KRG96660 | Soybean | nucleus | 32.65 | 21.89 |
| KRH33667 | Soybean | nucleus | 33.33 | 21.27 |
| KRG96619 | Soybean | plastid, vacuole | 32.99 | 19.39 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100794713 | MapMan:15.5.2.1 | EMBL:ACUP02005822 | EnsemblPlantsGene:GLYMA_09G139000 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K7LDT3 | EnsemblPlants:KRH38485 | ProteinID:KRH38485 |
| ProteinID:KRH38485.1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF563 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00023C97F7 | : | : |
Description
hypothetical protein
Coordinates
chr9:+:34486894..34489629
Molecular Weight (calculated)
33252.1 Da
IEP (calculated)
8.451
GRAVY (calculated)
-0.803
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKPLEKAK PKYRKGLWSP EEDNKLRNHI IKHGHGCWSS VPIKAGLQRN GKSCRLRWIN YLRPGLKRGV FSKHEKDTIM ALHHMLGNKW SQIAQHLPGR
101: TDNEVKNYWH SYLKKKVIKA KEMESDKQIQ HAGSSSDTVE NALSPQKLAT QDSSYGLLEN LDKSIAQNDN FFSKSYNFSK EAYQSSLPLP KLLFSEWLSV
201: DQVNGGISVN SDDSLVLGNE FDQNSTFQEA IMHMLEENFG EEYHNRLIHS STTEVYNSQI KSTNQMDGSD FMNCIPGNEL RSNFSLTNHG M
101: TDNEVKNYWH SYLKKKVIKA KEMESDKQIQ HAGSSSDTVE NALSPQKLAT QDSSYGLLEN LDKSIAQNDN FFSKSYNFSK EAYQSSLPLP KLLFSEWLSV
201: DQVNGGISVN SDDSLVLGNE FDQNSTFQEA IMHMLEENFG EEYHNRLIHS STTEVYNSQI KSTNQMDGSD FMNCIPGNEL RSNFSLTNHG M
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.