Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P20130_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | GSMUA_Achr3P20130_001 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | GSMUA_AchrUn_... | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P25340_001 | Banana | nucleus | 34.05 | 66.9 |
| Solyc01g009650.1.1 | Tomato | nucleus | 21.51 | 65.93 |
| Bra013900.1-P | Field mustard | nucleus | 32.62 | 42.33 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 41.22 | 41.37 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 44.09 | 39.94 |
| PGSC0003DMT400037080 | Potato | nucleus | 39.78 | 39.93 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 35.13 | 39.84 |
| Solyc03g025870.2.1 | Tomato | nucleus | 39.07 | 39.07 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 41.22 | 38.59 |
| KRH38485 | Soybean | nucleus | 40.14 | 38.49 |
| KRH09018 | Soybean | nucleus | 40.14 | 38.49 |
| KRH35334 | Soybean | nucleus | 36.92 | 38.15 |
| GSMUA_Achr11P... | Banana | nucleus | 30.47 | 36.48 |
| Bra018027.1-P | Field mustard | nucleus | 33.69 | 36.43 |
| CDY64708 | Canola | nucleus | 33.69 | 36.43 |
| CDY50197 | Canola | nucleus | 32.62 | 36.4 |
| CDY05881 | Canola | nucleus | 32.97 | 35.66 |
| CDY32589 | Canola | nucleus | 31.9 | 35.46 |
| AT3G48920.1 | Thale cress | nucleus | 32.97 | 35.25 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 36.56 | 35.17 |
| CDX92718 | Canola | nucleus | 32.97 | 35.11 |
| AT5G52260.1 | Thale cress | nucleus | 33.33 | 34.7 |
| AT4G25560.1 | Thale cress | nucleus | 34.41 | 33.92 |
| CDX94440 | Canola | nucleus | 31.18 | 33.85 |
| CDX89413 | Canola | nucleus | 32.62 | 33.7 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 32.97 | 33.7 |
| Bra029129.1-P | Field mustard | nucleus | 31.54 | 32.96 |
| CDY38910 | Canola | nucleus | 31.54 | 32.96 |
| KRG91494 | Soybean | nucleus | 37.99 | 31.83 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 31.9 | 31.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.82 | 31.27 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 32.62 | 29.64 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 34.77 | 28.28 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 30.11 | 28.09 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 30.82 | 27.65 |
| GSMUA_Achr10P... | Banana | nucleus | 29.39 | 27.61 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 27.6 | 27.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.96 | 27.56 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 33.69 | 27.33 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 31.9 | 26.65 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 28.32 | 26.6 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 29.03 | 26.38 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 29.75 | 26.02 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 30.47 | 25.99 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 32.62 | 25.28 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 32.97 | 25.21 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 27.6 | 25.16 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 33.33 | 25.14 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 28.32 | 25.08 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 27.24 | 24.92 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 27.96 | 24.76 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 31.18 | 24.17 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 31.9 | 23.73 |
| GSMUA_Achr11P... | Banana | nucleus | 31.9 | 23.73 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 31.9 | 23.36 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 24.37 | 21.94 |
| Bra019154.1-P | Field mustard | nucleus | 33.69 | 20.39 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P29410_001 | EnsemblPlants:GSMUA_Achr4T29410_001 | EnsemblPlantsGene:GSMUA_Achr4G29410_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0002954797 | UniProt:M0ST53 | MapMan:15.5.2.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G29410_001]
Coordinates
chr4:-:27377433..27378742
Molecular Weight (calculated)
31454.3 Da
IEP (calculated)
7.179
GRAVY (calculated)
-0.596
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKMCEKPK VNHRKGLWSP EEDQRLRDYI LAHGHGCWSS VPVKAGLQRN GKSCRLRWIN YLRPGLKRSA FTHEEEAMIM KLHAIMGNKW SRIAMHLPGR
101: TDNEVKNHWN THVKKKAIKI DGSASHDTMA KSLGSDDQSL RMEQFLDENN SQILLSETSA SLESFSPIPC QSILNVTNHA QSQRTPQPPL PKVLFEDWLP
201: MFSDNGGVNR RQESTSNSEA LSPQLLQLDM ISTDDFLHGF EAISNSGGLI QPQYGPVDLV SSNETYAGFE STHHMFVDL
101: TDNEVKNHWN THVKKKAIKI DGSASHDTMA KSLGSDDQSL RMEQFLDENN SQILLSETSA SLESFSPIPC QSILNVTNHA QSQRTPQPPL PKVLFEDWLP
201: MFSDNGGVNR RQESTSNSEA LSPQLLQLDM ISTDDFLHGF EAISNSGGLI QPQYGPVDLV SSNETYAGFE STHHMFVDL
001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
Arabidopsis Description
AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.