Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 82.4 | 87.17 |
| VIT_10s0523g00030.t01 | Wine grape | nucleus | 71.45 | 80.23 |
| Bra021818.1-P | Field mustard | cytosol | 13.61 | 77.31 |
| Zm00001d052138_P004 | Maize | nucleus | 77.96 | 76.82 |
| Zm00001d018207_P001 | Maize | nucleus | 78.11 | 76.19 |
| KXG31183 | Sorghum | nucleus, plastid | 77.96 | 75.83 |
| Os02t0771100-01 | Rice | nucleus | 76.78 | 75.77 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 75.15 | 73.3 |
| TraesCS6D01G305800.1 | Wheat | nucleus | 75.59 | 73.1 |
| CDY19171 | Canola | cytosol | 27.22 | 73.02 |
| Solyc12g005950.1.1 | Tomato | nucleus | 72.93 | 72.82 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 74.7 | 72.14 |
| PGSC0003DMT400036075 | Potato | nucleus | 69.67 | 72.13 |
| KRH14801 | Soybean | nucleus | 71.89 | 72.0 |
| KRH73341 | Soybean | nucleus | 70.56 | 71.3 |
| AT2G32950.1 | Thale cress | nucleus | 71.01 | 71.11 |
| CDY12145 | Canola | nucleus | 70.56 | 70.56 |
| CDY52540 | Canola | nucleus | 70.56 | 70.46 |
| Bra005541.1-P | Field mustard | nucleus | 69.67 | 70.4 |
| Solyc11g011980.1.1 | Tomato | nucleus | 69.53 | 69.94 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 69.82 | 69.82 |
| PGSC0003DMT400034706 | Potato | nucleus | 69.53 | 68.21 |
| CDX79494 | Canola | cytosol | 9.02 | 59.22 |
| GSMUA_Achr1P13690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 4.88 | 42.86 |
| GSMUA_Achr3P31750_001 | Banana | nucleus | 31.8 | 27.99 |
| GSMUA_Achr1P13700_001 | Banana | nucleus | 30.33 | 26.62 |
| GSMUA_Achr11P... | Banana | cytosol | 29.29 | 24.03 |
| GSMUA_Achr9P23670_001 | Banana | cytosol | 8.88 | 23.08 |
| GSMUA_Achr4P11950_001 | Banana | mitochondrion | 9.17 | 20.81 |
| GSMUA_Achr1P28310_001 | Banana | nucleus | 31.07 | 20.59 |
| GSMUA_Achr8P05740_001 | Banana | nucleus | 29.88 | 18.84 |
Protein Annotations
| MapMan:18.4.16 | MapMan:19.2.2.8.3.4.1 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.3.1 | Gene3D:3.30.40.10 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr3G20130_001 | EnsemblPlants:GSMUA_Achr3P20130_001 | EnsemblPlants:GSMUA_Achr3T20130_001 |
| InterPro:IPR001680 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0SG79 |
| PFAM:PF00400 | PFAM:PF13923 | ScanProsite:PS00518 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50089 |
| PFscan:PS50294 | PANTHER:PTHR44080 | PANTHER:PTHR44080:SF2 | SMART:SM00184 | SMART:SM00320 | SUPFAM:SSF50978 |
| SUPFAM:SSF57850 | UniParc:UPI0002952426 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
E3 ubiquitin-protein ligase COP1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G20130_001]
Coordinates
chr3:-:21326320..21342110
Molecular Weight (calculated)
75807.9 Da
IEP (calculated)
7.246
GRAVY (calculated)
-0.376
Length
676 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGASAGALV PSVSKAEEMG ASVAPLAVSS SETTDAEAEA EAERDKDLLC PICMGVIKDA FLTACGHSFC YMCIVTHLNN KSDCPCCGNY LTKNHLYPNF
101: LLNKLLKKQC ARQIAKTASP VEHLRLALQQ GCEMSVKELD GLLSLLSDKK RKMEQQEAEM NMQILLDFLH CLRKKKLEEL NEVQTDLQFI KEDINAVEKH
201: RAELYRARER YSVKLRMLLD DPIATKFWSS TADQHNSILV SNARSSLVGT CSRNLQVKSN DVKAQLSHQD YQRKDALSGS ETTNSLIQSG RVIARKRRIQ
301: AQFKELQECY LQKRRLGASQ SHRQEEKDAN AKVREGYHAG LDDFQSVLTT FTRYSRLRDI AELRHGDLFH SANIVSSIEF DRDDEFFATA GVSKRIKVFE
401: FSTVVNEPSD VNCPVVELAT RSKLSCLSWN KYSKNIIASS DYEGIVTVWD VTTRQSMMEY EEHEKRAWSV DFSRTEPTML VSGSDDCKVK VWCTKQEASV
501: INIDMKANIC CVKYNPGSSV HVAVGSADHH IHYFDLRNTS TPLRIFKGHW KAVSYVKFLS TNELASASTD STLRLWDVKD TCPVRTFKGH TNEKNFVGLT
601: VNNEYIACGS ETNEVFVYHK AISKPAAWHK FGSSDLDDAE DDAGSYFISA VCWKSDSPTM LAANSQGTIK VLVLAA
101: LLNKLLKKQC ARQIAKTASP VEHLRLALQQ GCEMSVKELD GLLSLLSDKK RKMEQQEAEM NMQILLDFLH CLRKKKLEEL NEVQTDLQFI KEDINAVEKH
201: RAELYRARER YSVKLRMLLD DPIATKFWSS TADQHNSILV SNARSSLVGT CSRNLQVKSN DVKAQLSHQD YQRKDALSGS ETTNSLIQSG RVIARKRRIQ
301: AQFKELQECY LQKRRLGASQ SHRQEEKDAN AKVREGYHAG LDDFQSVLTT FTRYSRLRDI AELRHGDLFH SANIVSSIEF DRDDEFFATA GVSKRIKVFE
401: FSTVVNEPSD VNCPVVELAT RSKLSCLSWN KYSKNIIASS DYEGIVTVWD VTTRQSMMEY EEHEKRAWSV DFSRTEPTML VSGSDDCKVK VWCTKQEASV
501: INIDMKANIC CVKYNPGSSV HVAVGSADHH IHYFDLRNTS TPLRIFKGHW KAVSYVKFLS TNELASASTD STLRLWDVKD TCPVRTFKGH TNEKNFVGLT
601: VNNEYIACGS ETNEVFVYHK AISKPAAWHK FGSSDLDDAE DDAGSYFISA VCWKSDSPTM LAANSQGTIK VLVLAA
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.