Factsheet for GSMUA_Achr9P23670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11950_001	Banana	mitochondrion	74.62	65.1
Bra029131.1-P	Field mustard	cytosol	51.92	39.24
CDY38909	Canola	cytosol	53.08	39.2
CDY32590	Canola	cytosol	52.31	38.42
AT5G23730.1	Thale cress	nucleus	54.23	38.32
CDY16865	Canola	nucleus	53.85	37.74
CDX87159	Canola	cytosol	53.46	37.57
AT5G52250.1	Thale cress	cytosol, plastid	52.69	35.58
PGSC0003DMT400015453	Potato	cytosol	50.0	35.14
Solyc11g005190.1.1	Tomato	cytosol	48.08	34.72
Zm00001d014990_P001	Maize	cytosol	52.31	32.69
TraesCS6A01G039200.1	Wheat	plastid	50.0	31.86
TraesCS6D01G045000.1	Wheat	plastid	49.62	31.62
TraesCS6B01G054100.1	Wheat	plastid	49.62	31.46
Bra026485.1-P	Field mustard	cytosol	21.15	27.78
OQU84205	Sorghum	plastid	53.08	27.77
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	6.54	22.08
VIT_16s0050g00020.t01	Wine grape	cytosol	54.23	18.31
GSMUA_AchrUn_...	Banana	nucleus	22.31	9.08
GSMUA_Achr3P20130_001	Banana	nucleus	23.08	8.88
GSMUA_Achr3P31750_001	Banana	nucleus	23.08	7.81
GSMUA_Achr11P...	Banana	cytosol	21.92	6.92
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	1.54	6.9
GSMUA_Achr1P13700_001	Banana	nucleus	20.38	6.88
GSMUA_Achr1P28310_001	Banana	nucleus	24.62	6.27
GSMUA_Achr8P05740_001	Banana	nucleus	22.69	5.5

Protein Annotations

EnsemblPlants:GSMUA_Achr9P23670_001	EnsemblPlants:GSMUA_Achr9T23670_001	EnsemblPlantsGene:GSMUA_Achr9G23670_001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR45389	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296BC15	UniProt:M0U2X4
MapMan:35.1	:	:	:	:	:

Description

Putative E3 ubiquitin-protein ligase COP1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G23670_001]

Coordinates

chr9:+:28511811..28513158

Molecular Weight (calculated)

28074.6 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.462

Length

260 amino acids

Sequence
(BLAST)

001: MNHSPAVSGP PQEPSEQQQQ AAHEERARCE WNFRLSAAVS PAATGAISDA IGTVEFDPTD RLLAAGGIAR KIRIYGLRSL LPEERGPSPT FSDHSTACRL
101: CICTPAKLSS LRWRPDSSGR IIGSGDYDGV VTEYDVERGF PVFERDEHAG RRVWCGRQVR AYRGHANSRN FIGMSVWRGA GLIGSGSESN EVFVYDLRWG
201: EPIWVQGFGN RGEEGQSRDG FVGVASWRQS AAGDGEGALA AGGSDGVLQV FVGRKMTGSD

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.