Factsheet for AT5G52250.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytoskeleton, cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32590	Canola	cytosol	77.92	84.75
CDY38909	Canola	cytosol	77.4	84.66
Bra029131.1-P	Field mustard	cytosol	74.81	83.72
AT5G23730.1	Thale cress	nucleus	57.66	60.33
Solyc11g005190.1.1	Tomato	cytosol	51.43	55.0
PGSC0003DMT400015453	Potato	cytosol	52.47	54.59
GSMUA_Achr9P23670_001	Banana	cytosol	35.58	52.69
GSMUA_Achr4P11950_001	Banana	mitochondrion	36.1	46.64
TraesCS6D01G045000.1	Wheat	plastid	43.64	41.18
TraesCS6A01G039200.1	Wheat	plastid	43.38	40.93
TraesCS6B01G054100.1	Wheat	plastid	42.86	40.24
Zm00001d014990_P001	Maize	cytosol	42.86	39.66
OQU84205	Sorghum	plastid	44.68	34.61
VIT_16s0050g00020.t01	Wine grape	cytosol	56.1	28.05
AT2G32950.1	Thale cress	nucleus	28.05	16.0
AT1G53090.1	Thale cress	nucleus	31.43	15.24
AT3G15354.3	Thale cress	nucleus	31.69	14.44
AT2G46340.2	Thale cress	nucleus	29.61	11.08
AT4G11110.1	Thale cress	nucleus	28.57	10.62
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.52	3.45

Protein Annotations

MapMan:18.4.16	Gene3D:2.130.10.10	MapMan:26.1.3.3	EntrezGene:835301	ProteinID:AED96192.1	EMBL:AK228112
ArrayExpress:AT5G52250	EnsemblPlantsGene:AT5G52250	RefSeq:AT5G52250	TAIR:AT5G52250	RefSeq:AT5G52250-TAIR-G	EnsemblPlants:AT5G52250.1
TAIR:AT5G52250.1	EMBL:AY087205	ProteinID:BAA97468.1	EMBL:BT003150	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0010114	GO:GO:0010218	GO:GO:0010224	GO:GO:0043496	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_200038.1	PFAM:PF00400	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001185	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616
PO:PO:0009009	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009052	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45389	UniProt:Q9LTJ6	Symbol:RUP1	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000000BF13	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

RUP1WD repeat-containing protein RUP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTJ6]

Coordinates

chr5:+:21216772..21218351

Molecular Weight (calculated)

41998.8 Da

IEP (calculated)

4.833

GRAVY (calculated)

-0.297

Length

385 amino acids

Sequence
(BLAST)

001: MEALFCSEIP NNNIRSSIND LSSSSSYTWP MIMTSSSSSS SSPTIMNIEN IPRCDWDLSL SAVVSSASTG SDAIGAIEFD PTGEIIATGG IARKIRSYRL
101: SSLLESRDDH VTASESYICT PAKLSSLKWR PDFSGRVIGS GDYDGVVTEY DVEKQVPVSE RDEHGGRRIW SVDYTLYNGS LIGASGSDDG TVQMWDPRNG
201: GTLEETVRPG GGAAICSVEF DPFGGSSIAV GCADRNAYVY DIRRLVDPLI VLDGHTKTVT YARFMDSHTI VTGSTDGSLK QWDIDNGRRV VRTYRGHVNS
301: RNFVGLSVWR HGGLVVSGSE NNQVFVYDKR WEEPVWVCGL GHTNRFGSDR RFVSSVCLRQ VDEDWCTLVA GGSDGALEIF SGKQS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.