Factsheet for TraesCS6B01G054100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G045000.1	Wheat	plastid	95.37	95.83
TraesCS6A01G039200.1	Wheat	plastid	94.88	95.34
Zm00001d014990_P001	Maize	cytosol	68.78	67.79
OQU84205	Sorghum	plastid	75.12	61.97
GSMUA_Achr9P23670_001	Banana	cytosol	31.46	49.62
Bra029131.1-P	Field mustard	cytosol	40.49	48.26
CDY38909	Canola	cytosol	40.73	47.44
CDY32590	Canola	cytosol	40.24	46.61
GSMUA_Achr4P11950_001	Banana	mitochondrion	33.66	46.31
Bra026485.1-P	Field mustard	cytosol	21.46	44.44
CDX87159	Canola	cytosol	38.78	42.97
AT5G23730.1	Thale cress	nucleus	38.54	42.93
AT5G52250.1	Thale cress	cytosol, plastid	40.24	42.86
CDY16865	Canola	nucleus	38.29	42.32
Solyc11g005190.1.1	Tomato	cytosol	37.07	42.22
PGSC0003DMT400015453	Potato	cytosol	37.56	41.62
VIT_16s0050g00020.t01	Wine grape	cytosol	41.46	22.08
TraesCS6B01G356400.1	Wheat	nucleus	22.44	13.28
TraesCS3B01G318600.1	Wheat	cytosol	24.15	12.87
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.98	6.9

Protein Annotations

EnsemblPlants:TraesCS6B01G054100.1	EnsemblPlantsGene:TraesCS6B01G054100	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR45389	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	SEG:seg
SMART:SM00320	SUPFAM:SSF50978	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6B:+:34219438..34220670

Molecular Weight (calculated)

43247.0 Da

IEP (calculated)

5.932

GRAVY (calculated)

-0.306

Length

410 amino acids

Sequence
(BLAST)

001: MTNPCSPSSP SSSSPTSAHH RRYEEPAAAA APYVGNGGRV DHGISFPAAV DDVEGAELSP PRCEWEFRLA ATVPSPSLAG ASEAIGSVDF DPAGRLLATG
101: GIARKVRIYD VAGLPSSPSP AACICVPAKL SSVRWRPEEG GRRAVGCGDY DGVVTEYDVE RGVAAWERDE HAGRRVWALD YAPRGAQTSM AASGSDDRTA
201: HVWDPRAPSG SWATARAGGA VLCVEFDPSG GPQLAVGSAD RRAAVYDVRA LGHGEVASMD GHARAVTYVR WAPARRVVTS AADGTHRLWE WPSTPELSGP
301: AREVRSYSGH VSGRSFVGMG LWRGAGLVAS GSESNHVFVY DLRWGKPVWV HPFDVASDSS PDAEGFVSAV TWLQGDADCG GALVAGRSDG VLKMFTCQPR
401: RGDDHQVDEL

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.