Factsheet for Solyc11g005190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015453	Potato	cytosol	91.94	89.46
Bra029131.1-P	Field mustard	cytosol	55.56	58.14
Bra026485.1-P	Field mustard	cytosol	31.39	57.07
CDY38909	Canola	cytosol	54.72	55.97
CDY32590	Canola	cytosol	54.17	55.08
AT5G23730.1	Thale cress	nucleus	56.11	54.89
CDX87159	Canola	cytosol	56.39	54.86
CDY16865	Canola	nucleus	56.39	54.72
AT5G52250.1	Thale cress	cytosol, plastid	55.0	51.43
GSMUA_Achr9P23670_001	Banana	cytosol	34.72	48.08
GSMUA_Achr4P11950_001	Banana	mitochondrion	35.83	43.29
TraesCS6D01G045000.1	Wheat	plastid	42.78	37.75
TraesCS6A01G039200.1	Wheat	plastid	42.5	37.5
TraesCS6B01G054100.1	Wheat	plastid	42.22	37.07
Zm00001d014990_P001	Maize	cytosol	41.94	36.3
OQU84205	Sorghum	plastid	43.06	31.19
VIT_16s0050g00020.t01	Wine grape	cytosol	59.17	27.66
Solyc11g011980.1.1	Tomato	nucleus	27.5	14.73
Solyc12g005950.1.1	Tomato	nucleus	26.94	14.33
Solyc07g063120.2.1	Tomato	cytosol	30.0	13.01
Solyc12g013840.1.1	Tomato	nucleus	29.17	12.18
Solyc08g081990.2.1	Tomato	cytosol	30.83	10.55
Solyc10g011690.2.1	Tomato	nucleus	29.44	10.4
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.28	1.72

Protein Annotations

MapMan:18.4.16	Gene3D:2.130.10.10	MapMan:26.1.3.3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4D4D2	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45389	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc11g005190.1
EnsemblPlants:Solyc11g005190.1.1	UniParc:UPI000276979D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:163009..164091

Molecular Weight (calculated)

40254.9 Da

IEP (calculated)

6.682

GRAVY (calculated)

-0.374

Length

360 amino acids

Sequence
(BLAST)

001: MTDISSILHQ EEKEEKARCE WDFHLSTIIS SCNNLSGSGC DTIGVLEFDP CGNFLASGGI ARKIRIYTVK SVQGERRIGD APLALDHSNA CDFFICTPAK
101: LGSIKWKPGL GSRVLGSGDY DGVVMEYDLE KKMPVFERDE HGGRRVWSID YCQSDPVLGA SGSDDGTMQM WDPRCGDSGK CLAMVQPTKG YSTPVCCVEF
201: NPFKGPIVAV GCADRRVYAY DMRKMLDPLF VLDGHEKAVT YIRFVDERTI ISSSIDGCLK MWNAEDQKVL RTYKGHSNSR RFVGLSVWKP GGLICCGSEN
301: NQVFVYDKRW GEPIWMYGRE PRHEHGFVSS VCWQQKDENQ CTLVAGDSDG VLRVFNGKRK

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.