Factsheet for Solyc12g013840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g089500.2.1
Solyc07g063120.2.1
Solyc12g005950.1.1
Solyc12g013840.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	Solyc07g063120.2.1	AT1G53090.1	18812498
AT1G53090.1	Solyc12g013840.1.1	AT1G53090.1	18812498
AT1G53090.1	Solyc12g005950.1.1	AT2G32950.1	12887588
AT1G53090.1	Solyc12g005950.1.1	AT2G32950.1	18812498
AT1G53090.1	Solyc12g005950.1.1	AT2G32950.1	21798944
AT1G53090.1	Solyc02g089500.2.1	AT5G15850.1	16854975
AT1G53090.1	Solyc02g089500.2.1	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039600	Potato	cytosol	98.03	97.35
Solyc07g063120.2.1	Tomato	cytosol	71.93	74.7
KRH55271	Soybean	cytosol	9.63	65.35
CDY50512	Canola	nucleus	55.8	65.18
VIT_19s0014g02660.t01	Wine grape	nucleus	67.29	63.6
AT1G53090.1	Thale cress	nucleus	58.35	63.35
Bra027259.1-P	Field mustard	nucleus, plastid	57.77	62.72
CDX97654	Canola	nucleus, plastid	57.54	62.39
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	5.57	62.34
CDX98548	Canola	nucleus, plastid	57.31	62.22
Bra021100.1-P	Field mustard	nucleus	56.03	61.92
CDY20122	Canola	nucleus	56.38	61.68
CDY21834	Canola	nucleus, plastid	56.5	61.57
KRH26155	Soybean	cytosol	55.68	60.91
KRH27246	Soybean	plastid	63.69	60.53
AT3G15354.3	Thale cress	nucleus	59.28	60.47
KRH55275	Soybean	cytosol	55.92	59.95
KRH22086	Soybean	plastid	62.99	59.93
Bra038098.1-P	Field mustard	nucleus	21.81	57.85
GSMUA_Achr3P31750_001	Banana	nucleus	51.39	57.68
TraesCS3D01G284500.2	Wheat	cytosol	51.39	57.53
TraesCS3B01G318600.1	Wheat	cytosol	51.28	57.48
TraesCS3A01G284700.2	Wheat	cytosol	51.28	57.03
OQU87453	Sorghum	cytosol	50.7	56.9
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	49.88	56.28
CDY25880	Canola	nucleus	30.05	56.18
Zm00001d043592_P004	Maize	cytosol	51.28	55.88
Zm00001d011746_P002	Maize	nucleus	51.39	55.44
GSMUA_Achr1P13700_001	Banana	nucleus	48.26	54.03
Os01t0725800-01	Rice	nucleus	37.82	51.91
Solyc12g005950.1.1	Tomato	nucleus	25.75	32.79
Solyc11g011980.1.1	Tomato	nucleus	25.29	32.44
Solyc11g005190.1.1	Tomato	cytosol	12.18	29.17
Solyc10g011690.2.1	Tomato	nucleus	34.22	28.95
Solyc08g081990.2.1	Tomato	cytosol	34.34	28.14

Protein Annotations

MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4DCR9
InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00320	SUPFAM:SSF50978
SUPFAM:SSF56112	EnsemblPlantsGene:Solyc12g013840.1	EnsemblPlants:Solyc12g013840.1.1	UniParc:UPI000276A4BE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:4630904..4638122

Molecular Weight (calculated)

96171.1 Da

IEP (calculated)

6.474

GRAVY (calculated)

-0.482

Length

862 amino acids

Sequence
(BLAST)

001: MEGSSQSGRE RSESSRGLNS SGVVDWNSRF RSASTIRLSS DASHDSGFVS KGWERIESSD VNCVKDQGVR GIDRKDVSLR HWLDNPERTV DSLECMHIFT
101: QIVEIVKLAH TQGIAVHNVR PSCFVMSSFN RVAFIESASC SDSGSDSCED EPNSSSSPLQ LEMIPGKDSA IASESSCLQS SSGHMVQTLE ANKNRQEEDN
201: NKHNFPMKQI LHLETNWYTS PEEVNDAPGT CASDIYRLGV LLFELYCTFN SSDEKIANMS CLRHRVLPPQ LLLKWPKEAS FCLWLLHPDP SSRPKVGELL
301: ESEFLKTPRH DLEEREAAIE LREKIDEQEL LLEFLLLIQQ KKQEAVENLH EIVSFLSSDV EEATKMQTTL KLKGGSSVEK AEEATKMKGG SSLEPAKHLN
401: SRRTNITEDH DSGSSGSRKR SRPSTGEESD GRPDESQKFE RHIENKSSIS AKSSRLMKNF RKLEAAYFMT RRRVIKRDKS MSRNCQTSPE CKSSATATER
501: SSLSNLSSKG GCNGDRQRGW INSYLEGLCK YFSFSKLEVK ADLKQGDLLN PSNLVCSLSF DRDGEFFATA GVNKKIKVFE YNSILNADRD IHYPVVEMAN
601: RSKLSSICWN GYIKSQLASS NFEGVVQVWD VTRSQLFMEM REHEKRVWSV DFSLADPTML ASGSDDGSVK LWNINQGVSV GTIKTKANVC CVQFPVDSGR
701: ALAFGSADHK IYYYDLRNSK LPLCTLIGHN KTVSYVKFID STTLVSASTD NTIKLWDLST CTSRILDSPL QSFTGHMNVK NFVGLSVSDG YIATGSETNE
801: VVIYHKAFPM PALSFKFNCT DPLSGDEVDD SAQFISSVCW RGQSPSLVAA NSMGNIKLLE MV

Best Arabidopsis Sequence Match ( AT3G15354.3 )
(BLAST)

001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT

Arabidopsis Description

SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.