CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93763
KRH01455
KRH14801
KRH18308
KRH22086
KRH26155
KRH27246
KRH45169
KRH55271
KRH55275
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	KRH22086	AT1G53090.1	18812498
AT1G53090.1	KRH26155	AT1G53090.1	18812498
AT1G53090.1	KRH27246	AT1G53090.1	18812498
AT1G53090.1	KRH55271	AT1G53090.1	18812498
AT1G53090.1	KRH55275	AT1G53090.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	12887588
AT1G53090.1	KRH73341	AT2G32950.1	12887588
AT1G53090.1	KRH14801	AT2G32950.1	18812498
AT1G53090.1	KRH73341	AT2G32950.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	21798944
AT1G53090.1	KRH73341	AT2G32950.1	21798944
AT1G53090.1	KRG93763	AT5G15850.1	16854975
AT1G53090.1	KRH01455	AT5G15850.1	16854975
AT1G53090.1	KRH18308	AT5G15850.1	16854975
AT1G53090.1	KRH45169	AT5G15850.1	16854975
AT1G53090.1	KRG93763	AT5G15850.1	18812498
AT1G53090.1	KRH01455	AT5G15850.1	18812498
AT1G53090.1	KRH18308	AT5G15850.1	18812498
AT1G53090.1	KRH45169	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22086	Soybean	plastid	96.69	96.8
KRH26155	Soybean	cytosol	68.91	79.31
KRH55275	Soybean	cytosol	69.24	78.11
VIT_19s0014g02660.t01	Wine grape	nucleus	69.02	68.64
CDY50512	Canola	nucleus	55.68	68.43
KRH55271	Soybean	cytosol	9.48	67.72
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	5.73	67.53
CDX97654	Canola	nucleus, plastid	57.99	66.16
CDX98548	Canola	nucleus, plastid	57.88	66.12
Solyc07g063120.2.1	Tomato	cytosol	60.42	66.02
Bra027259.1-P	Field mustard	nucleus, plastid	57.77	66.0
Bra021100.1-P	Field mustard	nucleus	56.56	65.77
CDY21834	Canola	nucleus, plastid	57.22	65.61
CDY20122	Canola	nucleus	56.89	65.48
AT1G53090.1	Thale cress	nucleus	57.11	65.24
AT3G15354.3	Thale cress	nucleus	60.75	65.21
Bra038098.1-P	Field mustard	nucleus	22.93	64.0
Solyc12g013840.1.1	Tomato	nucleus	60.53	63.69
PGSC0003DMT400039600	Potato	cytosol	60.64	63.36
CDY25880	Canola	nucleus	31.31	61.61
GSMUA_Achr3P31750_001	Banana	nucleus	51.16	60.42
TraesCS3D01G284500.2	Wheat	cytosol	49.83	58.7
TraesCS3B01G318600.1	Wheat	cytosol	49.72	58.65
OQU87453	Sorghum	cytosol	49.39	58.33
TraesCS3A01G284700.2	Wheat	cytosol	49.72	58.19
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	48.73	57.85
Zm00001d043592_P004	Maize	cytosol	50.28	57.65
Zm00001d011746_P002	Maize	nucleus	49.5	56.2
GSMUA_Achr1P13700_001	Banana	nucleus	46.97	55.32
Os01t0725800-01	Rice	nucleus	36.38	52.55
KRH25904	Soybean	mitochondrion	4.74	38.74
KRH60015	Soybean	plasma membrane	32.08	34.68
KRH73341	Soybean	nucleus	24.92	33.78
KRH14801	Soybean	nucleus	25.14	33.78
KRH41290	Soybean	nucleus	33.3	29.21
KRH06512	Soybean	nucleus	32.86	29.13
KRH47949	Soybean	nucleus	32.97	28.89
KRH27856	Soybean	nucleus	34.84	28.14
KRH77627	Soybean	nucleus	34.95	28.08

Protein Annotations

EntrezGene:100811457	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	UniProt:A0A0R0HL59	EMBL:ACUP02007788
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_12G224600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:KRH27245.1	EnsemblPlants:KRH27246	ProteinID:KRH27246
ProteinID:KRH27246.1	ProteinID:KRH27247.1	ProteinID:KRH27248.1	InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50011	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom
SMART:SM00220	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI0003DE9C30	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:38408930..38415581

Molecular Weight (calculated)

101130.0 Da

IEP (calculated)

5.661

GRAVY (calculated)

-0.354

Length

907 amino acids

Sequence
(BLAST)

001: MCCFTWPTCN SSWVKMEGSS GSAFHNSGSS RALNSSGVSD RNQRVHCPQR NPFSGEASQD SGFRKERDRV LLAQGGQPKN LGGGFSGLCE DEVEVDPFFC
101: AVEWGDISLR QWLDKPERSV DAFECLHIFR QIVEIVSVAH SQGVVVHNVR PSCFVMSSFN HISFIESASC SDTGSDSLGD GMNNQGGEVK TPTSLCPHDM
201: HQQSLGSEDF MPIKTSTTPA RSDSSCMLSS AVYAARASLI EETEENKMKD RRKDEEVEGK KQSFPMKQIL LMEMSWYTSP EEGAGESSSC ASDVYRLGVL
301: LFELFCPLSS REEKSRTMSS LRHRVLPPQL LLKWPKEASF CLWLLHPDPK SRPTLGELLQ SEFLNEQRDD TEEREAAIEL RQRIEDQELL LEFLLLLQQR
401: KQEVAEKLQH TVSFLCSDIE EVTKQHVRFK EITGAELGSD ERSASSFPSM TFVDSEDSAF LGTRKRVRLG MDVKNIEECD DDVGDDQKSN GSFLSKSSRL
501: MKNFKKLESA YFLTRCRPAY SSGKLAVRHP PVTSDGRGSV VVTERSCIND LKSKEQCREG ASAWINPFLE GLCKYLSFSK LKVKADLKQG DLLHSSNLVC
601: SLSFDRDGEF FATAGVNKKI KVFECDSIIN EDRDIHYPVV EMASRSKLSS ICWNTYIKSQ IASSNFEGVV QLWDVTRSQV ISEMREHERR VWSIDFSSAD
701: PTMLASGSDD GSVKLWSINQ GVSVGTIKTK ANVCCVQFPL DSARFLAFGS ADHRIYYYDL RNLKMPLCTL VGHNKTVSYI KFVDTVNLVS ASTDNTLKLW
801: DLSTCASRVI DSPIQSFTGH ANVKNFVGLS VSDGYIATGS ETNEVFIYHK AFPMPALSFK FQNTDPLSGN EVDDAVQFVS SVCWHGQSSS TLLAANSTGN
901: VKILEMV

Best Arabidopsis Sequence Match ( AT3G15354.3 )
(BLAST)

001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT

Arabidopsis Description

SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.