CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93763
KRH01455
KRH14801
KRH18308
KRH22086
KRH26155
KRH27246
KRH45169
KRH55271
KRH55275
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	KRH22086	AT1G53090.1	18812498
AT1G53090.1	KRH26155	AT1G53090.1	18812498
AT1G53090.1	KRH27246	AT1G53090.1	18812498
AT1G53090.1	KRH55271	AT1G53090.1	18812498
AT1G53090.1	KRH55275	AT1G53090.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	12887588
AT1G53090.1	KRH73341	AT2G32950.1	12887588
AT1G53090.1	KRH14801	AT2G32950.1	18812498
AT1G53090.1	KRH73341	AT2G32950.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	21798944
AT1G53090.1	KRH73341	AT2G32950.1	21798944
AT1G53090.1	KRG93763	AT5G15850.1	16854975
AT1G53090.1	KRH01455	AT5G15850.1	16854975
AT1G53090.1	KRH18308	AT5G15850.1	16854975
AT1G53090.1	KRH45169	AT5G15850.1	16854975
AT1G53090.1	KRG93763	AT5G15850.1	18812498
AT1G53090.1	KRH01455	AT5G15850.1	18812498
AT1G53090.1	KRH18308	AT5G15850.1	18812498
AT1G53090.1	KRH45169	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27246	Soybean	plastid	96.8	96.69
KRH26155	Soybean	cytosol	68.54	78.81
KRH55275	Soybean	cytosol	68.76	77.49
KRH55271	Soybean	cytosol	9.6	68.5
CDY50512	Canola	nucleus	55.3	67.89
VIT_19s0014g02660.t01	Wine grape	nucleus	67.99	67.54
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	5.74	67.53
Solyc07g063120.2.1	Tomato	cytosol	60.6	66.14
CDX98548	Canola	nucleus, plastid	57.28	65.37
CDX97654	Canola	nucleus, plastid	57.28	65.28
Bra021100.1-P	Field mustard	nucleus	56.07	65.13
Bra027259.1-P	Field mustard	nucleus, plastid	57.06	65.11
CDY20122	Canola	nucleus	56.4	64.85
CDY21834	Canola	nucleus, plastid	56.51	64.73
AT1G53090.1	Thale cress	nucleus	56.51	64.48
AT3G15354.3	Thale cress	nucleus	59.82	64.14
Bra038098.1-P	Field mustard	nucleus	22.63	63.08
Solyc12g013840.1.1	Tomato	nucleus	59.93	62.99
PGSC0003DMT400039600	Potato	cytosol	60.04	62.67
CDY25880	Canola	nucleus	30.79	60.52
GSMUA_Achr3P31750_001	Banana	nucleus	50.66	59.77
TraesCS3D01G284500.2	Wheat	cytosol	49.34	58.05
TraesCS3B01G318600.1	Wheat	cytosol	49.23	58.0
OQU87453	Sorghum	cytosol	48.9	57.68
TraesCS3A01G284700.2	Wheat	cytosol	49.23	57.55
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	48.23	57.2
Zm00001d043592_P004	Maize	cytosol	49.78	57.02
Zm00001d011746_P002	Maize	nucleus	49.12	55.69
GSMUA_Achr1P13700_001	Banana	nucleus	46.25	54.42
Os01t0725800-01	Rice	nucleus	35.87	51.75
KRH25904	Soybean	mitochondrion	4.75	38.74
KRH60015	Soybean	plasma membrane	31.9	34.45
KRH73341	Soybean	nucleus	24.94	33.78
KRH14801	Soybean	nucleus	25.17	33.78
KRH06512	Soybean	nucleus	32.89	29.13
KRH41290	Soybean	nucleus	33.22	29.11
KRH47949	Soybean	nucleus	33.0	28.89
KRH27856	Soybean	nucleus	34.88	28.14
KRH77627	Soybean	nucleus	34.99	28.08

Protein Annotations

EntrezGene:100809718	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	UniProt:A0A0R0GVC5	EMBL:ACUP02008380
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_13G276700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH22086	ProteinID:KRH22086
ProteinID:KRH22086.1	InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00220	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI0006ED531A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:37813212..37819376

Molecular Weight (calculated)

100894.0 Da

IEP (calculated)

5.678

GRAVY (calculated)

-0.331

Length

906 amino acids

Sequence
(BLAST)

001: MCCCTWPTCN SSWMKMEPSG SAFQNSGSSR ALNSSGVSDR NQRVHCPQRN PFLGEASQDS GFRKERDRFL LAQGGQPKNL GGGFSGLCED EVEVDPFFCA
101: VEWGDISLRQ WLDKPERSVG AFECLHIFRQ IVEIVSVAHS QGVVVHNVRP SCFVMSSFNH ISFIESASCS DTGSDSLGEG LNNQGGEVKT PTSLCPHDMP
201: QQSMGSEDFM PVKTLTTPAQ SDSSCMLSSA VYAARASLIE ETEENKMKDR RKDDEVEGKK QSFPMKQILL MEMSWYTSPE EGAGESSSCA SDVYRLGVLL
301: FELFCPLSSR EEKSRTMSSL RHRVLPPQLL LKWPKEASFC LWLLHPDPSG RPTLGRELLQ SDFLNEQRDD MEEREAAIEL RQRIDDQELL LEFLLLLQQR
401: KQEVAEKLQH TVSFLCSDIE EVTKQHVRFK EITGAELGSD EHSASSFPSM TVVDSEGSAF LGTRKRVRLG MDVKNIEECV DDVGDDQKSN GSFLSKSSRL
501: MKNFKKLESA YFLTRCRPAY SSGKLAVRHP PVTSDGRGSV VMTERSCIND LKSKEQCREG ASAWINPFLE GLCKYLSFSK LKVKADLKQG DLLHSSNLVC
601: SLSFDRDGEF FATAGVNKKI KVFECDSIIN EDRDIHYPVV EMASRSKLSS ICWNTYIKSQ IASSNFEGVV QLWDVTRSQV ISEMREHERR VWSIDFSSAD
701: PTMLASGSDD GSVKLWSINQ GVSVGTIKTK ANVCCVQFPL DSARFLAFGS ADHRIYYYDL RNLKMPLCTL VGHNKTVSYI KFVDTVNLVS ASTDNTLKLW
801: DLSTCASRVI DSPIQSFTGH ANVKNFVGLS VSDGYIATGS ETNEVFIYHK AFSMPALSFK FQNTDPLSGN EVDDAAQFVS SVCWRGQSST LLAANSTGNV
901: KILEMV

Best Arabidopsis Sequence Match ( AT1G53090.1 )
(BLAST)

001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQGV SIGTIKTKAN ICCVQFPSET GRSLAFGSAD HKVYYYDLRN PKLPLCTMIG HHKTVSYVRF VDSSTLVSSS TDNTLKLWDL SMSISGINET
701: PLHSFMGHTN VKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVLSYKFK TIDPVSELEV DDASQFISSV CWRGQSSTLV AANSTGNIKI LEMV

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.