CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69493
CDX85529
CDX90969
CDY12145
CDY25880
CDY26470
CDY50512
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	CDY25880	AT1G53090.1	18812498
AT1G53090.1	CDY50512	AT1G53090.1	18812498
AT1G53090.1	CDY12145	AT2G32950.1	12887588
AT1G53090.1	CDY52540	AT2G32950.1	12887588
AT1G53090.1	CDY12145	AT2G32950.1	18812498
AT1G53090.1	CDY52540	AT2G32950.1	18812498
AT1G53090.1	CDY12145	AT2G32950.1	21798944
AT1G53090.1	CDY52540	AT2G32950.1	21798944
AT1G53090.1	CDX69493	AT5G15850.1	16854975
AT1G53090.1	CDX85529	AT5G15850.1	16854975
AT1G53090.1	CDX90969	AT5G15850.1	16854975
AT1G53090.1	CDY26470	AT5G15850.1	16854975
AT1G53090.1	CDX69493	AT5G15850.1	18812498
AT1G53090.1	CDX85529	AT5G15850.1	18812498
AT1G53090.1	CDX90969	AT5G15850.1	18812498
AT1G53090.1	CDY26470	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038098.1-P	Field mustard	nucleus	70.28	99.69
CDY50512	Canola	nucleus	94.79	59.21
AT1G53090.1	Thale cress	nucleus	82.21	47.73
CDX97654	Canola	nucleus, plastid	69.41	40.25
CDX98548	Canola	nucleus, plastid	68.98	40.05
CDY21834	Canola	nucleus, plastid	68.11	39.7
CDY20122	Canola	nucleus	67.68	39.59
Os01t0725800-01	Rice	nucleus	47.94	35.19
Solyc07g063120.2.1	Tomato	cytosol	56.62	31.45
KRH27246	Soybean	plastid	61.61	31.31
VIT_19s0014g02660.t01	Wine grape	nucleus	61.39	31.03
KRH22086	Soybean	plastid	60.52	30.79
Solyc12g013840.1.1	Tomato	nucleus	56.18	30.05
PGSC0003DMT400039600	Potato	cytosol	55.97	29.72
GSMUA_Achr1P13700_001	Banana	nucleus	49.46	29.61
KRH26155	Soybean	cytosol	50.54	29.57
KRH55275	Soybean	cytosol	50.11	28.73
GSMUA_Achr3P31750_001	Banana	nucleus	47.72	28.65
TraesCS3D01G284500.2	Wheat	cytosol	47.51	28.44
TraesCS3B01G318600.1	Wheat	cytosol	47.29	28.35
TraesCS3A01G284700.2	Wheat	cytosol	47.51	28.26
Zm00001d043592_P004	Maize	cytosol	48.37	28.19
OQU87453	Sorghum	cytosol	46.64	27.99
Zm00001d011746_P002	Maize	nucleus	48.37	27.91
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	44.9	27.09
CDX86817	Canola	nucleus	30.8	14.65
CDY40851	Canola	nucleus	30.8	14.45
CDX83371	Canola	nucleus	27.77	14.33
CDY42035	Canola	nucleus	28.63	13.43
CDX95691	Canola	nucleus	26.46	13.35
CDX80009	Canola	nucleus	28.2	13.13
CDY12145	Canola	nucleus	15.62	10.65
CDY52540	Canola	nucleus	15.4	10.49
CDY19171	Canola	cytosol	3.69	6.75
KRH55271	Soybean	cytosol	1.74	6.3
CDY38909	Canola	cytosol	3.9	5.11
CDY32590	Canola	cytosol	3.9	5.08
CDY16865	Canola	nucleus	3.9	4.85
CDX87159	Canola	cytosol	3.69	4.59
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	0.43	2.6
CDX79494	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	Gene3D:2.130.10.10	GO:A0A078GHD1	UniProt:A0A078GHD1	EnsemblPlants:CDY25880
ProteinID:CDY25880	ProteinID:CDY25880.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00033329001	InterPro:IPR000719	InterPro:IPR015943	InterPro:Kinase-like_dom_sf	PFscan:PS50011	PANTHER:PTHR44218
PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	UniParc:UPI0004EEF2C1	InterPro:WD40/YVTN_repeat-like_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaA05g14710DBnaA05g14710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHD1]

Coordinates

chrLK032181:-:467770..473536

Molecular Weight (calculated)

52492.2 Da

IEP (calculated)

6.154

GRAVY (calculated)

-0.499

Length

461 amino acids

Sequence
(BLAST)

001: MEGFSESNSR GLNTSGFSEF LPAERDRSKS FLSHIGYVRS LLGSHKEENL RADNIVRALK CEDVSLRQWL DNPERSVDAF ECFHVFRQIV EIVNAAHSQG
101: VVVHNVRPSF PTMSSFNRVS FIESASCSDS GPKETTMKKS QDVGGSSKEE EFQPFPMKEI LAMEMSWYTS PKEDTGCATT YASDVYRLGV LLFELFCPVS
201: SREEKSRTMS SLRHRVLPPQ ILLNWSKEAS FCLWLLHPEP TYRPSMSELL KSEFINEPRE SLEEREVAID LRERIEEQEL LLEFLFLIQQ RKQETADKLR
301: KRIRQGAEGV EAEENEDDTL NSTLLESSRL MRNFKKLESV YFATRYRQIK ASASASKDKP LARYYSALSS DGKSSVSNLT QPDSRQGGWI DPFLEGLCKY
401: LTFSKLRVKA DLKQGDLLNS ANLVCAIGFD RDGELFATAG VNKKIKIFEC KSIINDGRDI H

Best Arabidopsis Sequence Match ( AT1G53090.1 )
(BLAST)

001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQGV SIGTIKTKAN ICCVQFPSET GRSLAFGSAD HKVYYYDLRN PKLPLCTMIG HHKTVSYVRF VDSSTLVSSS TDNTLKLWDL SMSISGINET
701: PLHSFMGHTN VKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVLSYKFK TIDPVSELEV DDASQFISSV CWRGQSSTLV AANSTGNIKI LEMV

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.