CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19171	Canola	cytosol	62.14	25.4
CDY12145	Canola	nucleus	69.9	10.65
CDY52540	Canola	nucleus	69.9	10.64
VIT_12s0059g01420.t01	Wine grape	nucleus	65.05	9.91
GSMUA_AchrUn_...	Banana	nucleus	58.25	9.39
Zm00001d052138_P004	Maize	nucleus	60.19	9.04
GSMUA_Achr3P20130_001	Banana	nucleus	59.22	9.02
TraesCS6B01G356400.1	Wheat	nucleus	60.19	8.95
Os02t0771100-01	Rice	nucleus	59.22	8.91
TraesCS6D01G305800.1	Wheat	nucleus	60.19	8.87
TraesCS6A01G326100.1	Wheat	nucleus	60.19	8.86
Zm00001d018207_P001	Maize	nucleus	58.25	8.66
KXG31183	Sorghum	nucleus, plastid	57.28	8.49
CDX87159	Canola	cytosol	28.16	7.84
CDY16865	Canola	nucleus	28.16	7.82
CDY38909	Canola	cytosol	24.27	7.1
CDY32590	Canola	cytosol	23.3	6.78
CDY50512	Canola	nucleus	39.81	5.56
CDY20122	Canola	nucleus	39.81	5.2
CDY21834	Canola	nucleus, plastid	39.81	5.18
CDX98548	Canola	nucleus, plastid	36.89	4.79
CDX97654	Canola	nucleus, plastid	35.92	4.65
CDX83371	Canola	nucleus	35.92	4.14
CDX95691	Canola	nucleus	34.95	3.94
CDY40851	Canola	nucleus	36.89	3.87
CDY42035	Canola	nucleus	35.92	3.76
CDX80009	Canola	nucleus	35.92	3.74
CDX86817	Canola	nucleus	33.01	3.51
CDY25880	Canola	nucleus	0.0	0.0

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX79494
ProteinID:CDX79494	ProteinID:CDX79494.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0016740	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00132240001	InterPro:IPR001680	InterPro:IPR015943	PFAM:PF00400
PANTHER:PTHR44080	PANTHER:PTHR44080:SF2	SUPFAM:SSF50978	UniPathway:UPA00143	UniParc:UPI0004EF1E34	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaC03g18300D

Coordinates

chrLK031818:-:375842..376657

Molecular Weight (calculated)

11718.1 Da

IEP (calculated)

9.851

GRAVY (calculated)

-0.331

Length

103 amino acids

Sequence
(BLAST)

001: MEKKGTRGRR VYGGEAFSTA GEVKVWCTSQ EESVLKIDMK ANIWCVKYNL GSSNFIAAGS ADHHIHYYDL RNISQPLHVF SGHKKAVSYV KFLFNNKLAC
101: IYR

Best Arabidopsis Sequence Match ( AT2G32950.2 )
(BLAST)

001: MCQKLHRPWI SFGKHYKGQG CDVSIKEVDN LLTLLAERKR KMEQEEAERN MQILLDFLHC LRKQKVDELN EVQTDLQYIK EDINAVERHR IDLYRARDRY
101: SVKLRMLGDD PSTRNAWPHE KNQIGFNSNS LSIRGGNFVG NYQNKKVEGK AQGSSHGLPK KDALSGSDSQ SLNQSTVSMA RKKRIHAQFN DLQECYLQKR
201: RQLADQPNSK QENDKSVVRR EGYSNGLADF QSVLTTFTRY SRLRVIAEIR HGDIFHSANI VSSIEFDRDD ELFATAGVSR CIKVFDFSSV VNEPADMQCP
301: IVEMSTRSKL SCLSWNKHEK NHIASSDYEG IVTVWDVTTR QSLMEYEEHE KRAWSVDFSR TEPSMLVSGS DDCKVKVWCT RQEASVINID MKANICCVKY
401: NPGSSNYIAV GSADHHIHYY DLRNISQPLH VFSGHKKAVS YVKFLSNNEL ASASTDSTLR LWDVKDNLPV RTFRGHTNEK NFVGLTVNSE YLACGSETNE
501: VYVYHKEITR PVTSHRFGSP DMDDAEEEAG SYFISAVCWK SDSPTMLTAN SQGTIKVLVL AA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.