Factsheet for GSMUA_AchrUn_randomP01410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P07740_001
GSMUA_Achr1P13690_001
GSMUA_Achr1P13700_001
GSMUA_Achr1P17480_001
GSMUA_Achr2P11450_001
GSMUA_Achr3P08340_001
GSMUA_Achr3P19000_001
GSMUA_Achr3P20130_001
GSMUA_Achr3P28130_001
GSMUA_Achr3P31750_001
GSMUA_Achr4P04990_001
GSMUA_Achr4P05180_001
GSMUA_Achr4P05410_001
GSMUA_Achr4P11960_001
GSMUA_Achr4P18680_001
GSMUA_Achr4P22180_001
GSMUA_Achr4P22850_001
GSMUA_Achr4P25340_001
GSMUA_Achr4P29410_001
GSMUA_Achr5P04140_001
GSMUA_Achr5P18570_001
GSMUA_Achr6P02100_001
GSMUA_Achr6P17690_001
GSMUA_Achr6P21320_001
GSMUA_Achr7P01270_001
GSMUA_Achr8P11340_001
GSMUA_Achr9P02360_001
GSMUA_Achr9P20930_001
GSMUA_Achr9P22690_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32950.1	GSMUA_Achr5P18570_001	AT1G04400.1	11509693
AT2G32950.1	GSMUA_AchrUn_...	AT1G04400.1	11509693
AT2G32950.1	GSMUA_Achr6P21320_001	AT1G06040.1	11226162
AT2G32950.1	GSMUA_Achr9P02360_001	AT1G06040.1	11226162
AT2G32950.1	GSMUA_Achr1P13690_001	AT1G53090.1	12887588
AT2G32950.1	GSMUA_Achr1P13700_001	AT1G53090.1	12887588
AT2G32950.1	GSMUA_Achr3P31750_001	AT1G53090.1	12887588
AT2G32950.1	GSMUA_Achr1P13690_001	AT1G53090.1	18812498
AT2G32950.1	GSMUA_Achr1P13700_001	AT1G53090.1	18812498
AT2G32950.1	GSMUA_Achr3P31750_001	AT1G53090.1	18812498
AT2G32950.1	GSMUA_Achr1P13690_001	AT1G53090.1	21798944
AT2G32950.1	GSMUA_Achr1P13700_001	AT1G53090.1	21798944
AT2G32950.1	GSMUA_Achr3P31750_001	AT1G53090.1	21798944
AT2G32950.1	GSMUA_Achr11P...	AT1G75540.1	17965270
AT2G32950.1	GSMUA_Achr11P...	AT1G75540.1	17965270
AT2G32950.1	GSMUA_Achr11P...	AT1G75540.1	17965270
AT2G32950.1	GSMUA_Achr1P07740_001	AT1G75540.1	17965270
AT2G32950.1	GSMUA_Achr4P04990_001	AT1G75540.1	17965270
AT2G32950.1	GSMUA_Achr4P05180_001	AT1G75540.1	17965270
AT2G32950.1	GSMUA_Achr9P20930_001	AT1G75540.1	17965270
AT2G32950.1	GSMUA_AchrUn_...	AT1G75540.1	17965270
AT2G32950.1	GSMUA_Achr3P08340_001	AT2G18790.1	11752373
AT2G32950.1	GSMUA_Achr6P21320_001	AT2G31380.1	11226162
AT2G32950.1	GSMUA_Achr9P02360_001	AT2G31380.1	11226162
AT2G32950.1	GSMUA_Achr3P20130_001	AT2G32950.1	18812498
AT2G32950.1	GSMUA_AchrUn_...	AT2G32950.1	18812498
AT2G32950.1	GSMUA_Achr3P20130_001	AT2G32950.1	9755158
AT2G32950.1	GSMUA_AchrUn_...	AT2G32950.1	9755158
AT2G32950.1	GSMUA_Achr4P22180_001	AT3G13550.1	11877375
AT2G32950.1	GSMUA_Achr4P22180_001	AT3G13550.1	16844902
AT2G32950.1	GSMUA_Achr6P02100_001	AT4G08920.1	11509693
AT2G32950.1	GSMUA_Achr6P02100_001	AT4G08920.1	11752373
AT2G32950.1	GSMUA_Achr1P17480_001	AT4G25560.1	12827204
AT2G32950.1	GSMUA_Achr2P11450_001	AT4G25560.1	12827204
AT2G32950.1	GSMUA_Achr4P05410_001	AT4G25560.1	12827204
AT2G32950.1	GSMUA_Achr4P11960_001	AT4G25560.1	12827204
AT2G32950.1	GSMUA_Achr4P25340_001	AT4G25560.1	12827204
AT2G32950.1	GSMUA_Achr4P29410_001	AT4G25560.1	12827204
AT2G32950.1	GSMUA_Achr8P11340_001	AT4G25560.1	12827204
AT2G32950.1	GSMUA_Achr11P...	AT5G14250.1	14597662
AT2G32950.1	GSMUA_AchrUn_...	AT5G14250.1	14597662
AT2G32950.1	GSMUA_Achr3P28130_001	AT5G15840.1	18296627
AT2G32950.1	GSMUA_Achr4P18680_001	AT5G15840.1	18296627
AT2G32950.1	GSMUA_Achr9P22690_001	AT5G15840.1	18296627
AT2G32950.1	GSMUA_Achr3P28130_001	AT5G15840.1	18388858
AT2G32950.1	GSMUA_Achr4P18680_001	AT5G15840.1	18388858
AT2G32950.1	GSMUA_Achr9P22690_001	AT5G15840.1	18388858
AT2G32950.1	GSMUA_Achr3P28130_001	AT5G15850.1	18812498
AT2G32950.1	GSMUA_Achr4P18680_001	AT5G15850.1	18812498
AT2G32950.1	GSMUA_Achr9P22690_001	AT5G15850.1	18812498
AT2G32950.1	GSMUA_Achr4P22850_001	AT5G46210.1	16844902
AT2G32950.1	GSMUA_Achr7P01270_001	AT5G46210.1	16844902
AT2G32950.1	GSMUA_Achr5P04140_001	AT5G56280.1	14597662
AT2G32950.1	GSMUA_Achr3P19000_001	AT5G63860.1	19165148
AT2G32950.1	GSMUA_Achr6P17690_001	AT5G63860.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20130_001	Banana	nucleus	87.17	82.4
Bra021818.1-P	Field mustard	cytosol	14.08	75.63
VIT_10s0523g00030.t01	Wine grape	nucleus	67.61	71.76
CDY19171	Canola	cytosol	27.54	69.84
Os02t0771100-01	Rice	nucleus	74.65	69.64
Zm00001d052138_P004	Maize	nucleus	73.71	68.66
KXG31183	Sorghum	nucleus, plastid	74.33	68.35
Zm00001d018207_P001	Maize	nucleus	73.87	68.11
TraesCS6B01G356400.1	Wheat	nucleus	72.77	67.1
TraesCS6D01G305800.1	Wheat	nucleus	73.08	66.81
TraesCS6A01G326100.1	Wheat	nucleus	72.77	66.43
Solyc12g005950.1.1	Tomato	nucleus	70.11	66.17
AT2G32950.1	Thale cress	nucleus	69.48	65.78
CDY12145	Canola	nucleus	69.17	65.38
KRH14801	Soybean	nucleus	69.01	65.33
Bra005541.1-P	Field mustard	nucleus	68.23	65.17
CDY52540	Canola	nucleus	69.01	65.14
PGSC0003DMT400036075	Potato	nucleus	66.51	65.08
KRH73341	Soybean	nucleus	68.08	65.02
Solyc11g011980.1.1	Tomato	nucleus	67.61	64.29
VIT_12s0059g01420.t01	Wine grape	nucleus	67.92	64.2
PGSC0003DMT400034706	Potato	nucleus	67.29	62.41
CDX79494	Canola	cytosol	9.39	58.25
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	4.85	40.26
GSMUA_Achr3P31750_001	Banana	nucleus	32.55	27.08
GSMUA_Achr1P13700_001	Banana	nucleus	31.77	26.36
GSMUA_Achr11P...	Banana	cytosol	30.83	23.91
GSMUA_Achr9P23670_001	Banana	cytosol	9.08	22.31
GSMUA_Achr1P28310_001	Banana	nucleus	32.86	20.59
GSMUA_Achr4P11950_001	Banana	mitochondrion	9.39	20.13
GSMUA_Achr8P05740_001	Banana	nucleus	31.77	18.94

Protein Annotations

MapMan:18.4.16	MapMan:19.2.2.8.3.4.1	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.1	Gene3D:3.30.40.10	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_AchrUn_randomG01410_001	EnsemblPlants:GSMUA_AchrUn_randomP01410_001
EnsemblPlants:GSMUA_AchrUn_randomT01410_001	InterPro:IPR001680	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0U5F3	PFAM:PF00400	PFAM:PF13923	PRINTS:PR00320	ScanProsite:PS00518	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50089	PFscan:PS50294	PANTHER:PTHR44080	PANTHER:PTHR44080:SF2	SMART:SM00184
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI000295586A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase COP1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01410_001]

Coordinates

chrchrUn_random:-:5478304..5492396

Molecular Weight (calculated)

71381.2 Da

IEP (calculated)

6.990

GRAVY (calculated)

-0.267

Length

639 amino acids

Sequence
(BLAST)

001: MGGSSAGVLV PSVSKADEMG ASVTPLAVSS SETTDVAGAP AAEGETVPDG SRDGAAVEAD AERDRDLLCP ICMGVIKDAF LTACGHCFCY MCIVTHLNNK
101: SDCPCCGNYL TKSHLYPNFL LNKLLKKQCV RQIAKSASPI EHLRVALKQG CEMSVKELDG LLSLLSEKKR RMEQQEAEMN MQILLDFLHS LRKKKLEELN
201: EVQTDMQFIK DDINAVEKHR TELYRVRERY SVKLRMLFDD PIPTKLTGSD NLQIRIIARK RKIQAQFKEL QECYLQKRRL GASQSHHPKE KVDAKVREGY
301: HVGLEDFQSI LTTFTKYSRL RVIAELRHGD LFHSANIVSS IEFDCDDEYF ATAGVSKRIK VFEFSTVLNQ PSEVNCPVVE LATRSKLSCL SWNKYSKNVI
401: ASSDYEGIVT VWDVTTRQSI MEYEEHEKRA WSVDFSRTEP SMLVSGSDDC KVKVWSTKQE ASVINIDMKA NICCVKYNPG SSVHVAVGSA DHKIHYFDLR
501: NTSSPLCVFK GHWKAVSYVK FLSTNELASA STDSTLRLWD VNGTCPVRTF VGHTNEKNFV GLTVNNEYIA CGSETNEVCV YHKAILTPAA RHKFGSWDLD
601: DAEDDAGLYF ISAVCWKSDS PTMLAANSQG TIKVLVLAA

Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)

001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.