Factsheet for GSMUA_Achr4P22180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P20500_001
GSMUA_Achr3P20130_001
GSMUA_Achr4P22850_001
GSMUA_Achr7P01270_001
GSMUA_Achr7P07400_001
GSMUA_Achr7P07410_001
GSMUA_Achr8P07200_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13550.1	GSMUA_Achr3P20130_001	AT2G32950.1	11877375
AT3G13550.1	GSMUA_AchrUn_...	AT2G32950.1	11877375
AT3G13550.1	GSMUA_Achr3P20130_001	AT2G32950.1	18552200
AT3G13550.1	GSMUA_AchrUn_...	AT2G32950.1	18552200
AT3G13550.1	GSMUA_Achr8P07200_001	AT4G05420.1	16844902
AT3G13550.1	GSMUA_Achr8P07200_001	AT4G05420.1	18552200
AT3G13550.1	GSMUA_Achr7P07400_001	AT4G10180.1	16844902
AT3G13550.1	GSMUA_Achr7P07410_001	AT4G10180.1	16844902
AT3G13550.1	GSMUA_Achr7P07400_001	AT4G10180.1	18552200
AT3G13550.1	GSMUA_Achr7P07410_001	AT4G10180.1	18552200
AT3G13550.1	GSMUA_Achr2P20500_001	AT4G14110.1	11877375
AT3G13550.1	GSMUA_Achr11P...	AT5G14250.1	11877375
AT3G13550.1	GSMUA_AchrUn_...	AT5G14250.1	11877375
AT3G13550.1	GSMUA_Achr8P31220_001	AT5G42970.1	11877375
AT3G13550.1	GSMUA_Achr9P19410_001	AT5G42970.1	11877375
AT3G13550.1	GSMUA_Achr4P22850_001	AT5G46210.1	16844902
AT3G13550.1	GSMUA_Achr7P01270_001	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00730.t01	Wine grape	plastid	77.7	61.36
Zm00001d021904_P001	Maize	plastid	76.26	57.61
TraesCS2A01G187000.1	Wheat	plastid	77.7	56.84
TraesCS2B01G220200.1	Wheat	plastid	77.7	56.25
EER97436	Sorghum	plastid	75.54	56.15
KRH42820	Soybean	plastid	70.5	55.68
AT3G13550.1	Thale cress	mitochondrion	71.94	54.95
Solyc01g005840.2.1	Tomato	plastid	69.78	53.59
GSMUA_Achr9P27870_001	Banana	cytosol	42.45	53.15
Bra027422.1-P	Field mustard	plastid	69.06	52.46
CDY23617	Canola	plastid	69.06	52.46
CDY59253	Canola	mitochondrion	69.06	52.46
Os07t0577400-01	Rice	nucleus	75.54	51.98
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	33.09	51.11
GSMUA_Achr9P28860_001	Banana	cytosol	40.29	50.45
GSMUA_Achr9P12710_001	Banana	cytosol	52.52	49.32
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	51.8	48.65
GSMUA_Achr3P11950_001	Banana	cytosol	43.88	48.03
GSMUA_Achr9P05290_001	Banana	cytosol	51.08	47.97
GSMUA_Achr8P27940_001	Banana	cytosol	51.08	47.97
GSMUA_Achr6P36250_001	Banana	nucleus	51.08	47.97
GSMUA_Achr4P19400_001	Banana	cytosol	50.36	47.3
GSMUA_Achr4P15590_001	Banana	cytosol	50.36	47.3
GSMUA_Achr7P17820_001	Banana	cytosol	50.36	47.3
GSMUA_Achr3P15810_001	Banana	cytosol	50.36	47.3
GSMUA_Achr4P02490_001	Banana	cytosol	49.64	46.62
GSMUA_Achr10P...	Banana	cytosol	49.64	46.62
GSMUA_Achr7P24690_001	Banana	cytosol	49.64	46.62
GSMUA_Achr6P05720_001	Banana	cytosol	48.92	45.95
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	48.92	45.95
GSMUA_Achr4P10380_001	Banana	cytosol	50.36	40.94
GSMUA_Achr4P08430_001	Banana	mitochondrion	50.36	39.33
GSMUA_Achr1P04790_001	Banana	cytosol	42.45	38.56
GSMUA_Achr1P27440_001	Banana	cytosol	42.45	38.56
GSMUA_Achr6P26870_001	Banana	cytosol	39.57	35.95
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	20.86	35.37
GSMUA_Achr9P06450_001	Banana	cytosol	42.45	34.1
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	51.08	33.81
GSMUA_Achr6P00800_001	Banana	nucleus	33.09	32.17
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	33.09	32.17
GSMUA_Achr2P17510_001	Banana	nucleus	33.09	31.72
GSMUA_Achr4P31050_001	Banana	cytosol	16.55	30.26
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	32.37	29.61
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	51.08	29.58
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	32.37	23.2
GSMUA_Achr5P04210_001	Banana	cytosol	28.06	23.08

Protein Annotations

MapMan:19.2.2.8.3.3.1	Gene3D:3.10.110.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0010099	EnsemblPlantsGene:GSMUA_Achr4G22180_001
EnsemblPlants:GSMUA_Achr4P22180_001	EnsemblPlants:GSMUA_Achr4T22180_001	InterPro:IPR000608	InterPro:IPR016135	UniProt:M0SR31	PFAM:PF00179
PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF41	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002953D56	:	:	:	:

Description

Constitutive photomorphogenesis protein 10 [Source:GMGC_GENE;Acc:GSMUA_Achr4G22180_001]

Coordinates

chr4:+:22516622..22522698

Molecular Weight (calculated)

15549.6 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.158

Length

139 amino acids

Sequence
(BLAST)

001: MLELNADPPA DCSAGPKGDN LYHWVSTIIG PQGTPYEDGI FFLDIVFPCD YPFKPPKVTF KTRIYHCNVD SVGDLNLDIL KDAWSPAMTI SKVLLAIRSI
101: ITNPVPSDNP EIAGITQLYL TDRAKHDEIA AEWTRRFAR

Best Arabidopsis Sequence Match ( AT3G13550.1 )
(BLAST)

001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK

Arabidopsis Description

COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.