Factsheet for GSMUA_Achr9P12740_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027688.1-P	Field mustard	cytosol	70.95	94.59
GSMUA_Achr4P15590_001	Banana	cytosol	93.24	93.24
PGSC0003DMT400057302	Potato	cytosol	91.89	91.89
HORVU2Hr1G118240.5	Barley	cytosol	79.05	91.41
GSMUA_Achr10P...	Banana	cytosol	91.22	91.22
KRH33057	Soybean	cytosol, nucleus, peroxisome	91.22	91.22
GSMUA_Achr9P05290_001	Banana	cytosol	91.22	91.22
GSMUA_Achr8P27940_001	Banana	cytosol	91.22	91.22
GSMUA_Achr7P24690_001	Banana	cytosol	91.22	91.22
GSMUA_Achr6P36250_001	Banana	nucleus	91.22	91.22
GSMUA_Achr9P28860_001	Banana	cytosol	68.24	90.99
GSMUA_Achr3P15810_001	Banana	cytosol	90.54	90.54
GSMUA_Achr4P02490_001	Banana	cytosol	90.54	90.54
GSMUA_Achr6P05720_001	Banana	cytosol	89.86	89.86
Solyc07g066080.2.1	Tomato	cytosol	89.86	89.86
GSMUA_Achr4P19400_001	Banana	cytosol	89.86	89.86
TraesCS4D01G067200.1	Wheat	plastid	65.54	86.61
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	86.49	86.49
GSMUA_Achr3P11950_001	Banana	cytosol	72.97	85.04
GSMUA_Achr9P27870_001	Banana	cytosol	63.51	84.68
TraesCS3A01G487000.1	Wheat	cytosol	59.46	83.81
GSMUA_Achr9P12710_001	Banana	cytosol	83.78	83.78
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	50.68	83.33
GSMUA_Achr7P17820_001	Banana	cytosol	81.08	81.08
GSMUA_Achr4P10380_001	Banana	cytosol	92.57	80.12
TraesCS4A01G244100.1	Wheat	peroxisome	68.92	78.46
TraesCS4A01G246700.1	Wheat	peroxisome	68.24	77.69
GSMUA_Achr4P08430_001	Banana	mitochondrion	92.57	76.97
TraesCS3D01G482300.1	Wheat	cytosol, extracellular, plastid	69.59	76.3
TraesCS1D01G082400.1	Wheat	cytosol, nucleus, peroxisome	71.62	74.13
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	89.86	63.33
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	91.89	56.67
GSMUA_Achr4P22180_001	Banana	cytosol	48.65	51.8
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	27.03	48.78
GSMUA_Achr1P27440_001	Banana	cytosol	49.32	47.71
GSMUA_Achr1P04790_001	Banana	cytosol	49.32	47.71
GSMUA_Achr6P26870_001	Banana	cytosol	47.97	46.41
GSMUA_Achr5P04210_001	Banana	cytosol	51.35	44.97
GSMUA_Achr6P00800_001	Banana	nucleus	41.22	42.66
GSMUA_Achr9P06450_001	Banana	cytosol	49.32	42.2
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	39.86	41.26
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	41.89	40.79
GSMUA_Achr2P17510_001	Banana	nucleus	39.86	40.69
GSMUA_Achr4P31050_001	Banana	cytosol	19.59	38.16
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	41.89	31.96

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr9G12740_001	EnsemblPlants:GSMUA_Achr9P12740_001	EnsemblPlants:GSMUA_Achr9T12740_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0TZT3	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF117	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002952183	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2-17 kDa [Source:GMGC_GENE;Acc:GSMUA_Achr9G12740_001]

Coordinates

chr9:-:8276422..8281485

Molecular Weight (calculated)

16521.9 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.341

Length

148 amino acids

Sequence
(BLAST)

001: MASKRIQKEL KDLERDPPVS CSAGPVGEDM FHWQATIMGP ADSPYAGGVF LVNIHFPPDY PFKPPKVSFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYETTAKS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.