Factsheet for GSMUA_Achr6P26870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P04790_001	Banana	cytosol	89.54	89.54
GSMUA_Achr1P27440_001	Banana	cytosol	88.24	88.24
GSMUA_Achr4P31050_001	Banana	cytosol	39.87	80.26
GSMUA_Achr9P06450_001	Banana	cytosol	90.2	79.77
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	41.18	76.83
VIT_12s0028g02220.t01	Wine grape	extracellular	89.54	74.46
GSMUA_Achr9P27870_001	Banana	cytosol	39.87	54.95
GSMUA_Achr9P28860_001	Banana	cytosol	39.22	54.05
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	30.07	51.11
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	48.37	50.0
GSMUA_Achr3P15810_001	Banana	cytosol	47.71	49.32
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	46.41	47.97
GSMUA_Achr4P15590_001	Banana	cytosol	46.41	47.97
GSMUA_Achr9P05290_001	Banana	cytosol	46.41	47.97
GSMUA_Achr8P27940_001	Banana	cytosol	46.41	47.97
GSMUA_Achr7P17820_001	Banana	cytosol	46.41	47.97
GSMUA_Achr4P19400_001	Banana	cytosol	45.75	47.3
GSMUA_Achr9P12710_001	Banana	cytosol	45.75	47.3
GSMUA_Achr7P24690_001	Banana	cytosol	45.75	47.3
GSMUA_Achr6P05720_001	Banana	cytosol	45.75	47.3
GSMUA_Achr10P...	Banana	cytosol	45.1	46.62
GSMUA_Achr4P02490_001	Banana	cytosol	45.1	46.62
GSMUA_Achr6P36250_001	Banana	nucleus	44.44	45.95
GSMUA_Achr3P11950_001	Banana	cytosol	37.25	44.88
GSMUA_Achr4P10380_001	Banana	cytosol	46.41	41.52
GSMUA_Achr4P08430_001	Banana	mitochondrion	46.41	39.89
GSMUA_Achr4P22180_001	Banana	cytosol	35.95	39.57
GSMUA_Achr2P17510_001	Banana	nucleus	34.64	36.55
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	33.99	36.36
GSMUA_Achr6P00800_001	Banana	nucleus	33.99	36.36
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	33.99	34.21
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	44.44	32.38
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	46.41	29.58
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	35.29	27.84
GSMUA_Achr5P04210_001	Banana	cytosol	23.53	21.3

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006301	GO:GO:0006464
GO:GO:0006511	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009653	GO:GO:0009987	GO:GO:0010039	GO:GO:0010053	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0030154	GO:GO:0046686	EnsemblPlantsGene:GSMUA_Achr6G26870_001	EnsemblPlants:GSMUA_Achr6P26870_001	EnsemblPlants:GSMUA_Achr6T26870_001
InterPro:IPR000608	InterPro:IPR016135	UniProt:M0TAI2	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000296E48D	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 35 [Source:GMGC_GENE;Acc:GSMUA_Achr6G26870_001]

Coordinates

chr6:+:27498405..27501202

Molecular Weight (calculated)

17231.8 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.335

Length

153 amino acids

Sequence
(BLAST)

001: MANRNLPQRI IKETQRLLSE PEPGISALPS EDNMRSFSVK ILGPNQSPYE GGVFKLELFL PDEYPMVAPK VRFLTKIYHP NIDKLGRICL DILKDKWTPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKANEAEALE TAKEWTHVYA SGA

Best Arabidopsis Sequence Match ( AT1G78870.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVD TAKEWTRLYA SGA

Arabidopsis Description

UBC35UBC35 [Source:UniProtKB/TrEMBL;Acc:A0A178WFI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.