Factsheet for GSMUA_Achr6P36250_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P15590_001	Banana	cytosol	92.57	92.57
GSMUA_Achr10P...	Banana	cytosol	91.22	91.22
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	91.22	91.22
GSMUA_Achr7P24690_001	Banana	cytosol	91.22	91.22
PGSC0003DMT400057302	Potato	cytosol	90.54	90.54
GSMUA_Achr9P28860_001	Banana	cytosol	67.57	90.09
Bra027688.1-P	Field mustard	cytosol	67.57	90.09
GSMUA_Achr6P05720_001	Banana	cytosol	89.86	89.86
HORVU2Hr1G118240.5	Barley	cytosol	77.7	89.84
GSMUA_Achr4P02490_001	Banana	cytosol	89.19	89.19
Solyc07g066080.2.1	Tomato	cytosol	89.19	89.19
GSMUA_Achr4P19400_001	Banana	cytosol	89.19	89.19
GSMUA_Achr9P05290_001	Banana	cytosol	88.51	88.51
GSMUA_Achr8P27940_001	Banana	cytosol	88.51	88.51
KRH33057	Soybean	cytosol, nucleus, peroxisome	87.84	87.84
GSMUA_Achr3P15810_001	Banana	cytosol	87.16	87.16
GSMUA_Achr9P27870_001	Banana	cytosol	64.86	86.49
TraesCS4D01G067200.1	Wheat	plastid	64.19	84.82
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	84.46	84.46
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	51.35	84.44
TraesCS3A01G487000.1	Wheat	cytosol	59.46	83.81
GSMUA_Achr9P12710_001	Banana	cytosol	83.78	83.78
GSMUA_Achr3P11950_001	Banana	cytosol	71.62	83.46
GSMUA_Achr7P17820_001	Banana	cytosol	81.08	81.08
GSMUA_Achr4P10380_001	Banana	cytosol	91.89	79.53
TraesCS4A01G244100.1	Wheat	peroxisome	67.57	76.92
GSMUA_Achr4P08430_001	Banana	mitochondrion	91.89	76.4
TraesCS4A01G246700.1	Wheat	peroxisome	66.89	76.15
TraesCS3D01G482300.1	Wheat	cytosol, extracellular, plastid	68.92	75.56
TraesCS1D01G082400.1	Wheat	cytosol, nucleus, peroxisome	70.95	73.43
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	98.65	69.52
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	89.19	55.0
GSMUA_Achr4P22180_001	Banana	cytosol	47.97	51.08
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	27.03	48.78
GSMUA_Achr1P27440_001	Banana	cytosol	47.97	46.41
GSMUA_Achr1P04790_001	Banana	cytosol	47.97	46.41
GSMUA_Achr6P00800_001	Banana	nucleus	43.24	44.76
GSMUA_Achr6P26870_001	Banana	cytosol	45.95	44.44
GSMUA_Achr5P04210_001	Banana	cytosol	50.0	43.79
GSMUA_Achr2P17510_001	Banana	nucleus	42.57	43.45
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	41.89	43.36
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	43.92	42.76
GSMUA_Achr9P06450_001	Banana	cytosol	47.97	41.04
GSMUA_Achr4P31050_001	Banana	cytosol	18.24	35.53
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	43.92	33.51

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr6G36250_001	EnsemblPlants:GSMUA_Achr6P36250_001	EnsemblPlants:GSMUA_Achr6T36250_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0TD67	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF68	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00029566AC	SEG:seg	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2-17 kDa [Source:GMGC_GENE;Acc:GSMUA_Achr6G36250_001]

Coordinates

chr6:+:34306297..34311078

Molecular Weight (calculated)

16502.9 Da

IEP (calculated)

7.570

GRAVY (calculated)

-0.274

Length

148 amino acids

Sequence
(BLAST)

001: MASKRIMKEL KDLEKDPPAS CSAGPVAEDI FHWQATIMGP ADSPFAGGIF LVNIHFPPDY PFKPPKVSFR TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSISSLL TDPNPDDPLV PEIAHMYKTD RVKYEATARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.