Factsheet for GSMUA_Achr3P26650_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P02250_001
GSMUA_Achr3P09070_001
GSMUA_Achr5P01020_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P18140_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P30420_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16740.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT2G16740.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT2G16740.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT2G16740.1	GSMUA_Achr10P...	AT3G18710.1	21798944
AT2G16740.1	GSMUA_Achr5P01020_001	AT3G18710.1	21798944
AT2G16740.1	GSMUA_Achr6P18140_001	AT3G18710.1	21798944
AT2G16740.1	GSMUA_Achr8P30420_001	AT3G18710.1	21798944
AT2G16740.1	GSMUA_Achr3P09070_001	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0120600-01	Rice	cytosol	92.57	92.57
VIT_03s0038g02390.t01	Wine grape	cytosol	91.22	91.22
KRH29288	Soybean	cytosol	91.22	91.22
KRH24311	Soybean	cytosol	90.54	90.54
Solyc02g083570.2.1	Tomato	cytosol	90.54	90.54
PGSC0003DMT400009229	Potato	nucleus	90.54	90.54
TraesCS6D01G069000.1	Wheat	cytosol	90.54	89.93
TraesCS6B01G095200.1	Wheat	cytosol	90.54	89.93
TraesCS6A01G071100.1	Wheat	cytosol	90.54	89.93
GSMUA_Achr7P17820_001	Banana	cytosol	89.86	89.86
GSMUA_Achr8P27940_001	Banana	cytosol	89.86	89.86
KXG29317	Sorghum	nucleus	89.19	89.19
GSMUA_Achr3P15810_001	Banana	cytosol	89.19	89.19
Zm00001d053897_P001	Maize	mitochondrion	89.19	89.19
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	88.51	88.51
GSMUA_Achr10P...	Banana	cytosol	88.51	88.51
GSMUA_Achr4P02490_001	Banana	cytosol	88.51	88.51
GSMUA_Achr4P15590_001	Banana	cytosol	88.51	88.51
GSMUA_Achr9P05290_001	Banana	cytosol	88.51	88.51
GSMUA_Achr7P24690_001	Banana	cytosol	88.51	88.51
GSMUA_Achr9P28860_001	Banana	cytosol	66.22	88.29
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	87.84	87.84
GSMUA_Achr6P05720_001	Banana	cytosol	87.16	87.16
GSMUA_Achr4P19400_001	Banana	cytosol	87.16	87.16
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	86.49	86.49
AT2G16740.1	Thale cress	cytosol	85.14	85.14
GSMUA_Achr9P12710_001	Banana	cytosol	84.46	84.46
GSMUA_Achr6P36250_001	Banana	nucleus	84.46	84.46
GSMUA_Achr9P27870_001	Banana	cytosol	62.84	83.78
CDX71304	Canola	cytosol, mitochondrion, nucleus	82.43	82.43
CDY31408	Canola	cytosol	81.76	81.76
GSMUA_Achr3P11950_001	Banana	cytosol	68.92	80.31
CDX89747	Canola	cytosol	79.05	79.05
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	47.97	78.89
CDY02238	Canola	cytosol	77.7	77.7
Bra013049.1-P	Field mustard	cytosol	77.7	77.7
GSMUA_Achr4P10380_001	Banana	cytosol	89.19	77.19
GSMUA_Achr4P08430_001	Banana	mitochondrion	89.19	74.16
Bra001995.1-P	Field mustard	cytosol	80.41	66.11
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	83.78	59.05
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	89.19	55.0
GSMUA_Achr1P27440_001	Banana	cytosol	50.68	49.02
GSMUA_Achr1P04790_001	Banana	cytosol	50.68	49.02
GSMUA_Achr4P22180_001	Banana	cytosol	45.95	48.92
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	27.03	48.78
GSMUA_Achr6P26870_001	Banana	cytosol	50.0	48.37
GSMUA_Achr9P06450_001	Banana	cytosol	50.68	43.35
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	41.22	42.66
GSMUA_Achr6P00800_001	Banana	nucleus	41.22	42.66
GSMUA_Achr2P17510_001	Banana	nucleus	41.22	42.07
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	41.22	40.13
GSMUA_Achr5P04210_001	Banana	cytosol	45.27	39.65
GSMUA_Achr4P31050_001	Banana	cytosol	18.92	36.84
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	41.22	31.44

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr3G26650_001	EnsemblPlants:GSMUA_Achr3P26650_001	EnsemblPlants:GSMUA_Achr3T26650_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0SI31	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF47	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000296BFD8	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2-17 kDa [Source:GMGC_GENE;Acc:GSMUA_Achr3G26650_001]

Coordinates

chr3:-:26413554..26414538

Molecular Weight (calculated)

16639.1 Da

IEP (calculated)

7.965

GRAVY (calculated)

-0.301

Length

148 amino acids

Sequence
(BLAST)

001: MASRRIIKEL KDLQRDPPTS CSAGPVADDM FHWQATIMGP NDSPYAGGVF LVNIHFPPDY PFKPPKVAFR TKVFHPNINN NGNICLDILK DQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHLCKND RMRYESTARS WTLKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.