Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013049.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX89747 | Canola | cytosol | 95.27 | 95.27 |
| CDY31408 | Canola | cytosol | 87.16 | 87.16 |
| CDX71304 | Canola | cytosol, mitochondrion, nucleus | 86.49 | 86.49 |
| AT2G16740.1 | Thale cress | cytosol | 85.14 | 85.14 |
| KRH24311 | Soybean | cytosol | 81.76 | 81.76 |
| KRH29288 | Soybean | cytosol | 81.08 | 81.08 |
| CDY34409 | Canola | cytosol | 81.08 | 81.08 |
| CDY25571 | Canola | cytosol | 81.08 | 81.08 |
| CDY35636 | Canola | cytosol | 80.41 | 80.41 |
| VIT_03s0038g02390.t01 | Wine grape | cytosol | 80.41 | 80.41 |
| CDY49174 | Canola | cytosol | 80.41 | 80.41 |
| CDY47067 | Canola | cytosol | 80.41 | 80.41 |
| CDY14388 | Canola | cytosol | 80.41 | 80.41 |
| CDX96210 | Canola | cytosol | 80.41 | 80.41 |
| CDY51965 | Canola | cytosol | 79.73 | 79.73 |
| Os02t0120600-01 | Rice | cytosol | 79.73 | 79.73 |
| CDY17396 | Canola | cytosol | 79.73 | 79.73 |
| Zm00001d053897_P001 | Maize | mitochondrion | 79.05 | 79.05 |
| CDX76970 | Canola | cytosol | 79.05 | 79.05 |
| KXG29317 | Sorghum | nucleus | 79.05 | 79.05 |
| PGSC0003DMT400058107 | Potato | cytosol, mitochondrion | 79.05 | 79.05 |
| Solyc03g033410.2.1 | Tomato | cytosol, mitochondrion | 79.05 | 79.05 |
| TraesCS6A01G071100.1 | Wheat | cytosol | 78.38 | 77.85 |
| TraesCS6B01G095200.1 | Wheat | cytosol | 78.38 | 77.85 |
| TraesCS6D01G069000.1 | Wheat | cytosol | 78.38 | 77.85 |
| GSMUA_Achr3P26650_001 | Banana | cytosol, mitochondrion, peroxisome | 77.7 | 77.7 |
| PGSC0003DMT400009229 | Potato | nucleus | 77.03 | 77.03 |
| Solyc02g083570.2.1 | Tomato | cytosol | 76.35 | 76.35 |
| CDY68877 | Canola | cytosol, mitochondrion | 81.08 | 75.0 |
| CDY06521 | Canola | cytosol, plastid | 81.08 | 75.0 |
| GSMUA_Achr7P17820_001 | Banana | cytosol | 75.0 | 75.0 |
| CDY11958 | Canola | cytosol | 81.76 | 69.94 |
| CDY08368 | Canola | cytosol | 74.32 | 69.18 |
| CDY54342 | Canola | cytosol | 80.41 | 64.67 |
| CDY39254 | Canola | cytosol | 50.0 | 63.79 |
| CDY38184 | Canola | cytosol | 73.65 | 60.56 |
| CDX73346 | Canola | cytosol | 43.92 | 58.56 |
| CDY37098 | Canola | cytosol | 43.92 | 58.56 |
| CDY23674 | Canola | cytosol | 43.92 | 58.56 |
| CDY36778 | Canola | cytosol | 82.43 | 56.22 |
| CDY06520 | Canola | cytosol | 51.35 | 49.03 |
| CDY65274 | Canola | cytosol | 46.62 | 47.26 |
| CDY40025 | Canola | cytosol | 47.97 | 46.41 |
| CDY54372 | Canola | cytosol | 47.3 | 45.75 |
| CDY35126 | Canola | cytosol | 47.3 | 45.75 |
| CDX83936 | Canola | cytosol | 47.3 | 45.75 |
| CDX81788 | Canola | cytosol | 47.3 | 45.75 |
| CDX96802 | Canola | cytosol | 46.62 | 45.1 |
| CDX88485 | Canola | cytosol | 46.62 | 45.1 |
| CDX87428 | Canola | cytosol | 46.62 | 45.1 |
| CDY14587 | Canola | cytosol | 46.62 | 44.81 |
| CDY26882 | Canola | cytosol | 43.24 | 44.14 |
| CDY57941 | Canola | cytosol | 45.27 | 43.23 |
| CDY66232 | Canola | mitochondrion, nucleus | 41.22 | 40.67 |
| CDY30726 | Canola | mitochondrion, nucleus | 41.22 | 40.67 |
| CDY23617 | Canola | plastid | 50.0 | 40.44 |
| CDY59253 | Canola | mitochondrion | 50.0 | 40.44 |
| CDY38761 | Canola | mitochondrion | 41.22 | 40.13 |
| CDY11654 | Canola | mitochondrion | 41.22 | 40.13 |
| CDY39315 | Canola | mitochondrion | 40.54 | 39.47 |
| CDX79272 | Canola | cytosol | 45.27 | 39.41 |
| CDY03040 | Canola | mitochondrion, nucleus | 34.46 | 36.17 |
| CDX84034 | Canola | nucleus | 25.68 | 35.51 |
| CDX73344 | Canola | cytosol | 37.16 | 33.54 |
| CDY68969 | Canola | mitochondrion | 32.43 | 33.1 |
| CDX96859 | Canola | mitochondrion | 37.16 | 29.1 |
Protein Annotations
| EnsemblPlants:CDY02238 | EnsemblPlantsGene:GSBRNA2T00113657001 | Gene3D:3.10.110.10 | GO:A0A078ERS8 | InterPro:IPR000608 | InterPro:IPR016135 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | MetaCyc:PWY-7511 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF47 |
| PFAM:PF00179 | PFscan:PS50127 | ProteinID:CDY02238 | ProteinID:CDY02238.1 | ScanProsite:PS00183 | SEG:seg |
| SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI0002540AFE | UniPathway:UPA00143 | MapMan:19.2.2.5.2 | : |
Description
BnaA03g39290D
Coordinates
chrLK031932:-:881925..882883
Molecular Weight (calculated)
16679.1 Da
IEP (calculated)
8.043
GRAVY (calculated)
-0.218
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKRILKEL RELQRDPPVL CSAGPIGEDM FHWQATIIGP IESPYTGGVF LVDINFTKDY PFKPPKVVFK TKVFHPNVNS NGSICLDILK DQWSPALTIS
101: KVLLSVCSLL TDPNPDDPLV PEIANIYKTD RVRYEATARS WTQKYASQ
101: KVLLSVCSLL TDPNPDDPLV PEIANIYKTD RVRYEATARS WTQKYASQ
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
Arabidopsis Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.