CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88485	Canola	cytosol	88.24	98.04
CDY57941	Canola	cytosol	88.82	97.42
CDX87428	Canola	cytosol	87.65	97.39
KRH21984	Soybean	endoplasmic reticulum, nucleus	87.06	96.73
CDX83936	Canola	cytosol	87.06	96.73
CDY54372	Canola	cytosol	87.06	96.73
CDY26882	Canola	cytosol	82.35	96.55
CDY14587	Canola	cytosol	87.06	96.1
TraesCS3A01G271800.1	Wheat	cytosol	86.47	96.08
TraesCS3B01G305500.1	Wheat	mitochondrion	86.47	96.08
TraesCS3D01G271400.1	Wheat	cytosol	86.47	96.08
Solyc07g062570.2.1	Tomato	plastid	86.47	96.08
CDX96802	Canola	cytosol	86.47	96.08
CDY35126	Canola	cytosol	86.47	96.08
CDX81788	Canola	cytosol	86.47	96.08
Solyc10g007260.2.1	Tomato	plastid	86.47	96.08
AT1G78870.2	Thale cress	cytosol	86.47	96.08
TraesCS1A01G392400.1	Wheat	cytosol	85.88	95.42
PGSC0003DMT400054795	Potato	cytosol	85.88	95.42
TraesCS1D01G400600.1	Wheat	cytosol	85.88	95.42
KRH26227	Soybean	cytosol	85.88	95.42
CDY40025	Canola	cytosol	85.88	95.42
PGSC0003DMT400032251	Potato	cytosol	85.88	95.42
KRH55097	Soybean	endoplasmic reticulum	85.88	95.42
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	85.29	94.77
EES03421	Sorghum	cytosol	84.71	94.12
KXG35379	Sorghum	cytosol	83.53	92.81
Zm00001d009552_P002	Maize	cytosol	85.29	91.19
TraesCS5A01G181700.1	Wheat	cytosol	81.18	90.2
TraesCS5B01G179700.1	Wheat	cytosol	81.18	90.2
TraesCS5D01G186100.1	Wheat	cytosol	81.18	90.2
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	81.18	89.03
Zm00001d038995_P001	Maize	cytosol	85.29	88.96
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	48.82	87.37
GSMUA_Achr4P31050_001	Banana	cytosol	38.82	86.84
VIT_19s0014g01460.t01	Wine grape	cytosol	78.24	85.81
Zm00001d043905_P003	Maize	cytosol	84.71	85.21
HORVU1Hr1G086610.1	Barley	cytosol, plastid	85.88	83.91
HORVU1Hr1G086480.1	Barley	mitochondrion	83.53	73.96
HORVU3Hr1G061790.1	Barley	cytosol	86.47	72.41
Zm00001d011565_P002	Maize	cytosol, mitochondrion	84.12	71.86
KRH27335	Soybean	endoplasmic reticulum	63.53	71.52
TraesCS1B01G420600.1	Wheat	vacuole	75.29	62.44
CDY37098	Canola	cytosol	34.71	53.15
CDY23674	Canola	cytosol	34.71	53.15
CDX73346	Canola	cytosol	34.71	53.15
CDY35636	Canola	cytosol	41.18	47.3
CDY34409	Canola	cytosol	41.18	47.3
CDY25571	Canola	cytosol	41.18	47.3
CDY51965	Canola	cytosol	41.18	47.3
CDY14388	Canola	cytosol	41.18	47.3
CDX76970	Canola	cytosol	41.18	47.3
CDY49174	Canola	cytosol	40.59	46.62
CDX89747	Canola	cytosol	40.59	46.62
CDX96210	Canola	cytosol	40.59	46.62
CDY47067	Canola	cytosol	40.59	46.62
CDY17396	Canola	cytosol	40.59	46.62
CDX71304	Canola	cytosol, mitochondrion, nucleus	40.0	45.95
CDY31408	Canola	cytosol	40.0	45.95
CDY02238	Canola	cytosol	39.41	45.27
CDY68877	Canola	cytosol, mitochondrion	41.18	43.75
CDY06521	Canola	cytosol, plastid	41.18	43.75
CDY11958	Canola	cytosol	41.18	40.46
CDY08368	Canola	cytosol	36.47	38.99
CDY39315	Canola	mitochondrion	34.71	38.82
CDY38761	Canola	mitochondrion	34.12	38.16
CDY11654	Canola	mitochondrion	34.12	38.16
CDY65274	Canola	cytosol	32.35	37.67
CDY54342	Canola	cytosol	40.59	37.5
CDY66232	Canola	mitochondrion, nucleus	32.35	36.67
CDY30726	Canola	mitochondrion, nucleus	32.35	36.67
CDY38184	Canola	cytosol	37.65	35.56
CDY03040	Canola	mitochondrion, nucleus	29.41	35.46
CDY23617	Canola	plastid	35.88	33.33
CDY06520	Canola	cytosol	30.0	32.9
CDY59253	Canola	mitochondrion	35.29	32.79
CDY36778	Canola	cytosol	40.59	31.8
CDX84034	Canola	nucleus	20.0	31.78
CDY68969	Canola	mitochondrion	25.88	30.34
CDY39254	Canola	cytosol	20.59	30.17
CDX96859	Canola	mitochondrion	33.53	30.16
CDX73344	Canola	cytosol	27.65	28.66

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	GO:A0A078CRB0	EnsemblPlants:CDX79272	ProteinID:CDX79272	ProteinID:CDX79272.1
EnsemblPlantsGene:GSBRNA2T00131917001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EEC30D	:	:

Description

BnaC06g20310D

Coordinates

chrLK031817:+:952275..954207

Molecular Weight (calculated)

19079.8 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.276

Length

170 amino acids

Sequence
(BLAST)

001: MANSSLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM VLGPSQSPYE GGVFKLELFL PEEYPMSAPK ASCFVHLGSF DDFDLEQVRF LTKIYHPNID
101: KLGRICLDIL QDKWSPALQI RTVLLSIQAL LSAPNPDDPL SENIAKHWKS NEAEAVETAK EWTRLYASGA

Best Arabidopsis Sequence Match ( AT1G16890.1 )
(BLAST)

001: MRYFNVMILG PTQSPYEGGV FKLELFLPEE YPMAAPKVRF LTKIYHPNID KLGRICLDIL KDKWSPALQI RTVLLSIQAL LSAPNPDDPL SENIAKHWKS
101: NEAEAVETAK EWTRLYASGA

Arabidopsis Description

UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol,vacuole,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.