Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002842.1-P | Field mustard | cytosol | 99.32 | 99.32 |
| CDX76970 | Canola | cytosol | 99.32 | 99.32 |
| CDY51965 | Canola | cytosol | 98.65 | 98.65 |
| AT5G56150.1 | Thale cress | cytosol, nucleus, peroxisome | 87.84 | 87.84 |
| CDY25571 | Canola | cytosol | 86.49 | 86.49 |
| CDY49174 | Canola | cytosol | 86.49 | 86.49 |
| CDY47067 | Canola | cytosol | 86.49 | 86.49 |
| CDY34409 | Canola | cytosol | 86.49 | 86.49 |
| CDX96210 | Canola | cytosol | 86.49 | 86.49 |
| CDY35636 | Canola | cytosol | 85.81 | 85.81 |
| CDY14388 | Canola | cytosol | 85.81 | 85.81 |
| CDY68877 | Canola | cytosol, mitochondrion | 90.54 | 83.75 |
| CDY06521 | Canola | cytosol, plastid | 90.54 | 83.75 |
| CDY02238 | Canola | cytosol | 79.73 | 79.73 |
| CDX71304 | Canola | cytosol, mitochondrion, nucleus | 79.73 | 79.73 |
| CDY31408 | Canola | cytosol | 79.05 | 79.05 |
| CDY11958 | Canola | cytosol | 91.89 | 78.61 |
| CDX89747 | Canola | cytosol | 77.7 | 77.7 |
| CDY08368 | Canola | cytosol | 77.03 | 71.7 |
| CDY39254 | Canola | cytosol | 54.73 | 69.83 |
| CDY54342 | Canola | cytosol | 86.49 | 69.57 |
| CDY38184 | Canola | cytosol | 77.03 | 63.33 |
| CDY36778 | Canola | cytosol | 92.57 | 63.13 |
| CDY37098 | Canola | cytosol | 42.57 | 56.76 |
| CDY23674 | Canola | cytosol | 42.57 | 56.76 |
| CDX73346 | Canola | cytosol | 42.57 | 56.76 |
| CDY06520 | Canola | cytosol | 58.78 | 56.13 |
| CDY40025 | Canola | cytosol | 48.65 | 47.06 |
| CDX81788 | Canola | cytosol | 47.97 | 46.41 |
| CDY35126 | Canola | cytosol | 47.97 | 46.41 |
| CDY54372 | Canola | cytosol | 47.3 | 45.75 |
| CDX83936 | Canola | cytosol | 47.3 | 45.75 |
| CDX96802 | Canola | cytosol | 47.3 | 45.75 |
| CDX88485 | Canola | cytosol | 46.62 | 45.1 |
| CDX87428 | Canola | cytosol | 46.62 | 45.1 |
| CDY26882 | Canola | cytosol | 43.92 | 44.83 |
| CDY14587 | Canola | cytosol | 46.62 | 44.81 |
| CDY65274 | Canola | cytosol | 43.92 | 44.52 |
| CDY57941 | Canola | cytosol | 46.62 | 44.52 |
| CDY66232 | Canola | mitochondrion, nucleus | 41.89 | 41.33 |
| CDY30726 | Canola | mitochondrion, nucleus | 41.89 | 41.33 |
| CDX79272 | Canola | cytosol | 46.62 | 40.59 |
| CDY39315 | Canola | mitochondrion | 41.22 | 40.13 |
| CDY38761 | Canola | mitochondrion | 40.54 | 39.47 |
| CDY11654 | Canola | mitochondrion | 40.54 | 39.47 |
| CDY23617 | Canola | plastid | 48.65 | 39.34 |
| CDY59253 | Canola | mitochondrion | 48.65 | 39.34 |
| CDY03040 | Canola | mitochondrion, nucleus | 35.81 | 37.59 |
| CDX84034 | Canola | nucleus | 25.68 | 35.51 |
| CDY68969 | Canola | mitochondrion | 34.46 | 35.17 |
| CDX73344 | Canola | cytosol | 36.49 | 32.93 |
| CDX96859 | Canola | mitochondrion | 37.84 | 29.63 |
Protein Annotations
| MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | GO:A0A078FWP6 | UniProt:A0A078FWP6 | EnsemblPlants:CDY17396 | ProteinID:CDY17396 |
| ProteinID:CDY17396.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00095510001 | InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF117 | MetaCyc:PWY-7511 | SMART:SM00212 | SUPFAM:SSF54495 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniPathway:UPA00143 | UniParc:UPI0004EE42D8 | SEG:seg |
Description
BnaA10g10300DBnaA10g10300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWP6]
Coordinates
chrLK032072:+:684015..685609
Molecular Weight (calculated)
16556.7 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.417
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRINSEL RDLQKDPPLS CSAGPVGDDM YHWQATIMGP TDSPFTGGVF LVSIHFPPDY PFKPPKVSFR TKVYHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSISSLL TDPNPDDPLV PEIANIYKTD RTKYENTARS WTQKYAMG
101: KVLLSISSLL TDPNPDDPLV PEIANIYKTD RTKYENTARS WTQKYAMG
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
Arabidopsis Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.