Factsheet for Bra002842.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17396	Canola	cytosol	99.32	99.32
CDX76970	Canola	cytosol	98.65	98.65
Bra028946.1-P	Field mustard	cytosol	85.81	90.71
Bra035605.1-P	Field mustard	cytosol	90.54	90.54
Bra027688.1-P	Field mustard	cytosol	67.57	90.09
AT5G56150.1	Thale cress	cytosol, nucleus, peroxisome	87.84	87.84
Bra041101.1-P	Field mustard	cytosol	86.49	86.49
Bra029076.1-P	Field mustard	cytosol	86.49	86.49
Bra022645.1-P	Field mustard	cytosol	86.49	86.49
Bra001347.1-P	Field mustard	cytosol	85.81	85.81
Bra003066.1-P	Field mustard	cytosol	85.81	85.81
Bra013049.1-P	Field mustard	cytosol	79.73	79.73
Bra027749.1-P	Field mustard	nucleus	76.35	74.34
Bra001995.1-P	Field mustard	cytosol	77.7	63.89
Bra032244.1-P	Field mustard	cytosol	47.97	47.33
Bra026018.1-P	Field mustard	cytosol	47.97	46.41
Bra026700.1-P	Field mustard	cytosol	47.3	45.75
Bra016626.1-P	Field mustard	cytosol	47.3	45.75
Bra008383.1-P	Field mustard	cytosol	46.62	45.1
Bra035071.1-P	Field mustard	cytosol	41.22	43.88
Bra029252.1-P	Field mustard	mitochondrion, nucleus	41.22	40.67
Bra017410.1-P	Field mustard	mitochondrion, nucleus	41.22	40.13
Bra026833.1-P	Field mustard	mitochondrion, nucleus	41.22	40.13
Bra026222.1-P	Field mustard	mitochondrion, nucleus	41.22	40.13
Bra029711.1-P	Field mustard	nucleus	83.78	40.0
Bra016264.1-P	Field mustard	mitochondrion	40.54	39.47
Bra024808.1-P	Field mustard	mitochondrion, nucleus	40.54	39.47
Bra026582.1-P	Field mustard	mitochondrion, nucleus	40.54	39.47
Bra027422.1-P	Field mustard	plastid	48.65	39.34
Bra016704.1-P	Field mustard	nucleus	37.84	36.84
Bra016703.1-P	Field mustard	nucleus	41.22	29.05

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra002842	EnsemblPlants:Bra002842.1	EnsemblPlants:Bra002842.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4CF60	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF117	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002544854	SEG:seg	:	:	:	:

Description

AT5G56150 (E=2e-069) UBC30 | UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase

Coordinates

chrA10:+:7196657..7197607

Molecular Weight (calculated)

16590.7 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.424

Length

148 amino acids

Sequence
(BLAST)

001: MASRRINSEL RDLQKDPPFS CSAGPVGDDM YHWQATIMGP TDSPFTGGVF LVSIHFPPDY PFKPPKVSFR TKVYHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSISSLL TDPNPDDPLV PEIANIYKTD RTKYENTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT5G56150.1 )
(BLAST)

001: MASKRINKEL RDLQRDPPVS CSAGPTGDDM FQWQATIMGP ADSPFAGGVF LVTIHFPPDY PFKPPKVAFR TKVYHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD RVKYESTAQS WTQKYAMG

Arabidopsis Description

UBC30UBC30 [Source:UniProtKB/TrEMBL;Acc:A0A178UMN8]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.