Factsheet for Bra013049.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001717.1-P
Bra002208.1-P
Bra004436.1-P
Bra022347.1-P
Bra037568.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16740.1	Bra004436.1-P	AT2G47700.1	21798944
AT2G16740.1	Bra001717.1-P	AT3G18710.1	21798944
AT2G16740.1	Bra022347.1-P	AT3G18710.1	21798944
AT2G16740.1	Bra037568.1-P	AT3G18710.1	21798944
AT2G16740.1	Bra002208.1-P	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02238	Canola	cytosol	100.0	100.0
AT2G16740.1	Thale cress	cytosol	85.14	85.14
Bra027688.1-P	Field mustard	cytosol	62.16	82.88
KRH24311	Soybean	cytosol	81.76	81.76
KRH29288	Soybean	cytosol	81.08	81.08
Bra035605.1-P	Field mustard	cytosol	81.08	81.08
Bra028946.1-P	Field mustard	cytosol	76.35	80.71
VIT_03s0038g02390.t01	Wine grape	cytosol	80.41	80.41
Bra003066.1-P	Field mustard	cytosol	80.41	80.41
Bra029076.1-P	Field mustard	cytosol	80.41	80.41
Bra022645.1-P	Field mustard	cytosol	80.41	80.41
Bra001347.1-P	Field mustard	cytosol	79.73	79.73
Os02t0120600-01	Rice	cytosol	79.73	79.73
Bra041101.1-P	Field mustard	cytosol	79.73	79.73
Bra002842.1-P	Field mustard	cytosol	79.73	79.73
Zm00001d053897_P001	Maize	mitochondrion	79.05	79.05
KXG29317	Sorghum	nucleus	79.05	79.05
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	79.05	79.05
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	79.05	79.05
TraesCS6B01G095200.1	Wheat	cytosol	78.38	77.85
TraesCS6A01G071100.1	Wheat	cytosol	78.38	77.85
TraesCS6D01G069000.1	Wheat	cytosol	78.38	77.85
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	77.7	77.7
PGSC0003DMT400009229	Potato	nucleus	77.03	77.03
Solyc02g083570.2.1	Tomato	cytosol	76.35	76.35
GSMUA_Achr7P17820_001	Banana	cytosol	75.0	75.0
Bra001995.1-P	Field mustard	cytosol	85.81	70.56
Bra027749.1-P	Field mustard	nucleus	72.3	70.39
Bra032244.1-P	Field mustard	cytosol	50.0	49.33
Bra026018.1-P	Field mustard	cytosol	47.3	45.75
Bra026700.1-P	Field mustard	cytosol	47.3	45.75
Bra016626.1-P	Field mustard	cytosol	46.62	45.1
Bra008383.1-P	Field mustard	cytosol	46.62	45.1
Bra035071.1-P	Field mustard	cytosol	41.89	44.6
Bra029252.1-P	Field mustard	mitochondrion, nucleus	41.22	40.67
Bra027422.1-P	Field mustard	plastid	50.0	40.44
Bra016264.1-P	Field mustard	mitochondrion	41.22	40.13
Bra026222.1-P	Field mustard	mitochondrion, nucleus	40.54	39.47
Bra026833.1-P	Field mustard	mitochondrion, nucleus	40.54	39.47
Bra017410.1-P	Field mustard	mitochondrion, nucleus	39.86	38.82
Bra024808.1-P	Field mustard	mitochondrion, nucleus	39.86	38.82
Bra026582.1-P	Field mustard	mitochondrion, nucleus	39.86	38.82
Bra029711.1-P	Field mustard	nucleus	77.7	37.1
Bra016704.1-P	Field mustard	nucleus	37.16	36.18
Bra016703.1-P	Field mustard	nucleus	40.54	28.57

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra013049	EnsemblPlants:Bra013049.1	EnsemblPlants:Bra013049.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4D989	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF47	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002540AFE	SEG:seg	:	:	:	:

Description

AT2G16740 (E=6e-064) UBC29 | UBC29 (ubiquitin-conjugating enzyme 29); ubiquitin-protein ligase

Coordinates

chrA03:+:20772023..20772818

Molecular Weight (calculated)

16679.1 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.218

Length

148 amino acids

Sequence
(BLAST)

001: MATKRILKEL RELQRDPPVL CSAGPIGEDM FHWQATIIGP IESPYTGGVF LVDINFTKDY PFKPPKVVFK TKVFHPNVNS NGSICLDILK DQWSPALTIS
101: KVLLSVCSLL TDPNPDDPLV PEIANIYKTD RVRYEATARS WTQKYASQ

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.