Factsheet for Solyc02g083570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g080080.2.1
Solyc11g005700.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16740.1	Solyc11g005700.1.1	AT3G18710.1	21798944
AT2G16740.1	Solyc01g080080.2.1	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009229	Potato	nucleus	99.32	99.32
KRH24311	Soybean	cytosol	92.57	92.57
VIT_03s0038g02390.t01	Wine grape	cytosol	91.89	91.89
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	91.89	91.89
KRH29288	Soybean	cytosol	91.89	91.89
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	90.54	90.54
Os02t0120600-01	Rice	cytosol	89.19	89.19
Solyc05g050230.2.1	Tomato	cytosol	88.51	88.51
Solyc03g007470.2.1	Tomato	cytosol	88.51	88.51
Solyc08g008220.2.1	Tomato	cytosol	88.51	88.51
GSMUA_Achr7P17820_001	Banana	cytosol	88.51	88.51
Solyc10g011740.2.1	Tomato	cytosol	88.51	88.51
Solyc06g082600.2.1	Tomato	extracellular	87.84	87.84
Solyc06g007510.2.1	Tomato	cytosol	87.84	87.84
Solyc08g081950.2.1	Tomato	cytosol	70.27	87.39
TraesCS6A01G071100.1	Wheat	cytosol	87.84	87.25
TraesCS6B01G095200.1	Wheat	cytosol	87.84	87.25
TraesCS6D01G069000.1	Wheat	cytosol	87.84	87.25
Solyc01g095490.2.1	Tomato	cytosol	87.16	87.16
Solyc12g056100.1.1	Tomato	cytosol	87.16	87.16
KXG29317	Sorghum	nucleus	86.49	86.49
AT2G16740.1	Thale cress	cytosol	86.49	86.49
Solyc07g066080.2.1	Tomato	cytosol	84.46	84.46
Zm00001d053897_P001	Maize	mitochondrion	84.46	84.46
CDX71304	Canola	cytosol, mitochondrion, nucleus	84.46	84.46
CDY31408	Canola	cytosol	83.78	83.78
CDY02238	Canola	cytosol	76.35	76.35
Bra013049.1-P	Field mustard	cytosol	76.35	76.35
CDX89747	Canola	cytosol	75.68	75.68
Bra001995.1-P	Field mustard	cytosol	82.43	67.78
Solyc07g062570.2.1	Tomato	plastid	47.3	45.75
Solyc10g007260.2.1	Tomato	plastid	47.3	45.75
Solyc06g070980.2.1	Tomato	mitochondrion, nucleus	43.92	42.76
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	43.92	42.76
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	43.24	42.11
Solyc02g067420.2.1	Tomato	nucleus	43.24	42.11
Solyc01g005840.2.1	Tomato	plastid	49.32	40.33

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4BAM5	EMBL:KY246921
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF47	SMART:SM00212
SUPFAM:SSF54495	EnsemblPlantsGene:Solyc02g083570.2	EnsemblPlants:Solyc02g083570.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00027686AE	:	:	:	:	:

Description

UBC29 [Source:UniProtKB/TrEMBL;Acc:K4BAM5]

Coordinates

chr2:-:46930003..46931481

Molecular Weight (calculated)

16700.1 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.428

Length

148 amino acids

Sequence
(BLAST)

001: MASRRIQKEL KDLQRDPPTS CSAGPVAQDM FHWQATIIGP NDSPYAGGVF QVTIHFPPDY PFKPPKVAFR TRVFHPNINN NGNICLDILK DQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMCKTD KTKYESMARS WTQKYAMN

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.